Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48688 * 2 1 4 4 N 1.46956 * 109.49237 * 239.95223 * 2 1 3 5 5 C 1.46952 * 110.88222 * 180.69133 * 4 2 1 6 6 C 1.53049 * 109.36356 * 59.31687 * 5 4 2 7 7 N 1.46956 * 109.36700 * 301.60203 * 6 5 4 8 8 C 1.46904 * 111.00042 * 183.18895 * 7 6 5 9 9 C 1.46952 * 110.88222 * 59.31891 * 7 6 5 10 10 H 1.09005 * 109.49037 * 60.64656 * 9 7 6 11 11 C 1.50702 * 109.49211 * 180.71267 * 9 7 6 12 12 H 1.07999 * 119.99392 * 59.51685 * 11 9 7 13 13 C 1.37872 * 120.00053 * 239.52255 * 11 9 7 14 14 N 1.31517 * 120.00221 * 173.59194 * 13 11 9 15 15 Si 1.86802 * 119.99996 * 353.58544 * 13 11 9 16 16 H 1.48499 * 109.46824 * 84.92332 * 15 13 11 17 17 H 1.48506 * 109.47003 * 204.91931 * 15 13 11 18 18 H 1.48501 * 109.47302 * 324.91743 * 15 13 11 19 19 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47822 * 300.05270 * 1 2 3 21 21 H 1.09010 * 109.46863 * 60.05093 * 1 2 3 22 22 H 1.00902 * 110.99871 * 56.81940 * 4 2 1 23 23 H 1.09005 * 109.49037 * 299.35344 * 5 4 2 24 24 H 1.08998 * 109.51073 * 179.29870 * 5 4 2 25 25 H 1.09006 * 109.49078 * 181.63356 * 6 5 4 26 26 H 1.09007 * 109.48943 * 61.56660 * 6 5 4 27 27 H 1.08994 * 109.47295 * 54.18151 * 8 7 6 28 28 H 1.09003 * 109.47016 * 174.18570 * 8 7 6 29 29 H 1.09003 * 109.47055 * 294.18601 * 8 7 6 30 30 H 0.96994 * 120.00660 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0204 -0.6937 -1.1992 5 6 3.4894 -0.7259 -1.2217 6 6 4.0004 -1.4482 0.0270 7 7 3.5100 -0.7546 1.2262 8 6 4.0419 -1.3743 2.4474 9 6 2.0410 -0.7223 1.2488 10 1 1.6551 -1.7417 1.2627 11 6 1.5730 0.0098 2.4801 12 1 1.8652 1.0369 2.6412 13 6 0.7719 -0.6317 3.4007 14 7 0.4669 -0.0379 4.5339 15 14 0.1193 -2.3441 3.0385 16 1 1.1356 -3.3539 3.4292 17 1 -1.1279 -2.5724 3.8116 18 1 -0.1686 -2.4674 1.5869 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5146 0.8894 21 1 -0.3633 0.5131 -0.8905 22 1 1.6550 -0.2680 -2.0379 23 1 3.8753 0.2935 -1.2357 24 1 3.8282 -1.2552 -2.1123 25 1 5.0904 -1.4479 0.0270 26 1 3.6367 -2.4758 0.0272 27 1 5.1293 -1.4177 2.3888 28 1 3.7480 -0.7811 3.3134 29 1 3.6427 -2.3838 2.5460 30 1 -0.0969 -0.4890 5.1815 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259775682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -16.794330 kcal Electronic energy + Delta-G solvation = -12117.378093 eV Core-core repulsion = 10139.412148 eV Total energy + Delta-G solvation = -1977.965944 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06997 -35.59317 -34.95569 -32.94453 -28.85308 -28.49927 -26.39276 -23.34967 -22.63850 -20.42090 -19.19958 -17.13757 -16.35524 -15.92748 -15.80246 -15.40077 -15.17961 -14.73162 -14.10519 -13.43227 -13.26116 -13.09793 -12.81564 -12.64912 -12.47861 -12.22233 -11.83162 -11.52121 -11.40866 -11.14878 -10.70346 -9.36634 -8.96789 -8.32317 -6.33857 1.25649 1.30769 1.40920 2.28956 2.91344 3.36217 3.46926 4.18610 4.22124 4.37594 4.49376 4.54230 4.61800 4.72716 4.74605 4.86729 4.94366 5.03622 5.15566 5.23789 5.35373 5.43041 5.58832 6.08789 6.18367 6.34209 6.64552 6.67381 6.78850 7.32564 8.84279 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040902 B = 0.019034 C = 0.016082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.395518 B = 1470.735415 C = 1740.672917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.101 3.899 3 H 0.021 0.979 4 N -0.697 5.697 5 C 0.065 3.935 6 C 0.047 3.953 7 N -0.557 5.557 8 C 0.048 3.952 9 C 0.191 3.809 10 H 0.001 0.999 11 C -0.489 4.489 12 H 0.033 0.967 13 C 0.033 3.967 14 N -0.938 5.938 15 Si 0.920 3.080 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.246 1.246 19 H 0.045 0.955 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.348 0.652 23 H 0.032 0.968 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.001 0.999 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -3.795 -10.768 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.010 4.010 3 H 0.039 0.961 4 N -0.329 5.329 5 C -0.064 4.064 6 C -0.081 4.081 7 N -0.283 5.283 8 C -0.101 4.101 9 C 0.083 3.917 10 H 0.019 0.981 11 C -0.528 4.528 12 H 0.052 0.948 13 C -0.166 4.166 14 N -0.578 5.578 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.170 1.170 19 H 0.064 0.936 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.167 0.833 23 H 0.050 0.950 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.019 0.981 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.919 -3.953 -10.357 11.758 hybrid contribution -0.528 -0.449 0.406 0.803 sum 3.391 -4.402 -9.951 11.397 Atomic orbital electron populations 1.21642 0.94242 1.01214 1.01521 1.21446 0.95286 0.94551 0.89683 0.96061 1.60617 1.08966 1.58518 1.04848 1.21981 0.87444 0.99176 0.97814 1.22308 1.00142 0.95160 0.90524 1.62363 1.10720 1.53026 1.02144 1.22027 0.99090 0.95401 0.93541 1.19676 0.84663 0.93848 0.93464 0.98133 1.20822 1.29213 0.98560 1.04194 0.94836 1.25657 0.96173 1.00621 0.94148 1.70019 1.38636 1.40398 1.08738 0.86194 0.78346 0.81211 0.79687 1.20336 1.20983 1.17025 0.93640 0.93089 0.91093 0.83300 0.94967 0.87809 0.89021 0.96128 0.90298 0.93105 0.98092 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.24 71.98 0.66 -4.36 16 2 C 0.10 4.17 2.69 44.92 0.12 4.29 16 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 4 N -0.70 -23.37 6.55 -491.14 -3.21 -26.59 16 5 C 0.07 1.95 6.72 86.31 0.58 2.53 16 6 C 0.05 1.61 5.62 86.31 0.48 2.09 16 7 N -0.56 -24.25 4.78 -900.95 -4.30 -28.55 16 8 C 0.05 2.02 9.23 127.69 1.18 3.20 16 9 C 0.19 9.15 1.43 44.18 0.06 9.21 16 10 H 0.00 0.05 4.75 -2.38 -0.01 0.04 16 11 C -0.49 -27.58 6.35 25.60 0.16 -27.42 16 12 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 13 C 0.03 1.90 5.47 84.65 0.46 2.36 16 14 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 15 Si 0.92 44.78 26.97 68.60 1.85 46.63 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.25 -11.43 5.82 99.48 0.58 -10.85 16 19 H 0.04 1.81 7.20 -2.39 -0.02 1.80 16 20 H 0.05 2.25 7.28 -2.39 -0.02 2.23 16 21 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 22 H 0.35 9.51 8.83 -89.69 -0.79 8.71 16 23 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.09 2.62 8.11 -2.38 -0.02 2.60 16 26 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 28 H 0.05 2.47 7.08 -2.39 -0.02 2.45 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -64.24 235.61 -1.46 -65.70 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.19 Total: 8.16 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.72 Total: -8.10 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -7.22 Total: -112.40 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.85 Total: 46.63 kcal Total: -64.24 -1.46 -65.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.906 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds