Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.90912 * 2 1 4 4 C 1.53992 * 109.92122 * 238.89419 * 2 1 3 5 5 H 1.09005 * 110.30369 * 0.79369 * 4 2 1 6 6 N 1.46904 * 110.30731 * 122.95195 * 4 2 1 7 7 C 1.54588 * 105.14375 * 241.87334 * 4 2 1 8 8 H 1.08998 * 110.72657 * 263.42277 * 7 4 2 9 9 C 1.50699 * 110.72845 * 140.31223 * 7 4 2 10 10 H 1.08004 * 119.99606 * 0.02562 * 9 7 4 11 11 C 1.37873 * 120.00334 * 180.02562 * 9 7 4 12 12 N 1.31513 * 120.00187 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00021 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47252 * 59.99849 * 13 11 9 15 15 H 1.48501 * 109.47042 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46890 * 299.99730 * 13 11 9 17 17 C 1.54940 * 102.92108 * 21.95528 * 7 4 2 18 18 N 1.47902 * 109.91812 * 121.30411 * 2 1 3 19 19 C 1.46906 * 110.99952 * 333.50928 * 18 2 1 20 20 H 1.09002 * 109.47153 * 181.10312 * 1 2 3 21 21 H 1.09001 * 109.46832 * 61.10503 * 1 2 3 22 22 H 1.09004 * 109.47261 * 301.10484 * 1 2 3 23 23 H 1.00894 * 111.00148 * 298.54968 * 6 4 2 24 24 H 1.00901 * 110.99610 * 62.51184 * 6 4 2 25 25 H 0.96995 * 120.00004 * 179.97438 * 12 11 9 26 26 H 1.08998 * 110.67066 * 81.01956 * 17 7 4 27 27 H 1.09002 * 110.67062 * 203.98406 * 17 7 4 28 28 H 1.08999 * 109.46588 * 59.99923 * 19 18 2 29 29 H 1.08998 * 109.47188 * 179.97438 * 19 18 2 30 30 H 1.08994 * 109.47402 * 300.00072 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0547 -0.7480 -1.2396 5 1 1.2225 -1.0995 -1.8496 6 7 2.9329 0.1262 -2.0287 7 6 2.8536 -1.9470 -0.6796 8 1 3.9176 -1.7145 -0.6348 9 6 2.6142 -3.1819 -1.5096 10 1 1.9555 -3.1385 -2.3645 11 6 3.2358 -4.3669 -1.1777 12 7 4.0374 -4.4199 -0.1364 13 14 2.9395 -5.8973 -2.2070 14 1 3.3715 -5.6449 -3.6051 15 1 3.7176 -7.0303 -1.6448 16 1 1.4931 -6.2336 -2.1889 17 6 2.2661 -2.1206 0.7435 18 7 2.0338 -0.7225 1.1881 19 6 1.0591 -0.6742 2.2862 20 1 -0.3633 -1.0275 0.0198 21 1 -0.3633 0.4966 -0.8998 22 1 -0.3634 0.5309 0.8799 23 1 2.4324 0.9367 -2.3610 24 1 3.7466 0.3965 -1.4966 25 1 4.4744 -5.2536 0.0973 26 1 1.3275 -2.6737 0.7074 27 1 2.9811 -2.6209 1.3966 28 1 0.1265 -1.1378 1.9646 29 1 1.4546 -1.2134 3.1470 30 1 0.8729 0.3638 2.5614 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = -20.041349 kcal Electronic energy + Delta-G solvation = -11880.331360 eV Core-core repulsion = 9902.224614 eV Total energy + Delta-G solvation = -1978.106746 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.42260 -35.36342 -34.57091 -31.82050 -30.37227 -27.67603 -25.53384 -24.93270 -21.45324 -20.58098 -18.54159 -17.04419 -16.64694 -16.10514 -15.82884 -15.31555 -14.60372 -14.03019 -14.00603 -13.51655 -13.07076 -12.92453 -12.85328 -12.58613 -12.43550 -12.33065 -11.87472 -11.74482 -11.16503 -10.92140 -10.51420 -9.38047 -9.20303 -8.12325 -6.21133 1.41619 1.43497 1.51006 2.43822 3.16431 3.31128 3.86373 3.91574 4.20423 4.24991 4.42344 4.60453 4.66157 4.72547 4.79798 4.83965 4.95130 5.07256 5.17287 5.37398 5.52989 5.66267 5.88073 6.05251 6.31163 6.40633 6.46425 6.82917 6.89039 7.45711 8.97065 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.047539 B = 0.013683 C = 0.012296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.850305 B = 2045.783006 C = 2276.555179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 H 0.086 0.914 4 C 0.095 3.905 5 H 0.067 0.933 6 N -0.838 5.838 7 C 0.056 3.944 8 H 0.007 0.993 9 C -0.524 4.524 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.920 5.920 13 Si 0.954 3.046 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.069 3.931 18 N -0.536 5.536 19 C 0.016 3.984 20 H 0.039 0.961 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.343 0.657 24 H 0.340 0.660 25 H 0.261 0.739 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 7.763 1.361 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.080 4.080 3 H 0.104 0.896 4 C -0.017 4.017 5 H 0.085 0.915 6 N -0.368 5.368 7 C 0.037 3.963 8 H 0.025 0.975 9 C -0.563 4.563 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.559 5.559 13 Si 0.780 3.220 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.195 1.195 17 C -0.059 4.059 18 N -0.260 5.260 19 C -0.133 4.133 20 H 0.059 0.941 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.157 0.843 24 H 0.153 0.847 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.806 7.264 1.161 9.372 hybrid contribution -0.807 -0.781 0.163 1.135 sum -6.613 6.483 1.324 9.355 Atomic orbital electron populations 1.22307 0.95432 1.01320 1.03066 1.23401 0.94749 0.98201 0.91605 0.89587 1.22424 0.94823 0.93183 0.91310 0.91533 1.58726 1.10787 1.23026 1.44234 1.19445 0.93839 0.92092 0.90960 0.97515 1.21368 1.27537 0.95027 1.12334 0.93132 1.25758 0.94739 1.01844 0.96268 1.70075 1.30706 1.27373 1.27737 0.85675 0.78331 0.78936 0.79104 1.19799 1.20928 1.19536 1.22953 0.97222 0.87335 0.98387 1.64891 1.41962 1.12076 1.07055 1.22554 0.94092 1.02333 0.94302 0.94148 0.90986 0.90759 0.84314 0.84707 0.93020 0.96774 0.93152 0.95046 0.92288 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 7.66 71.98 0.55 -4.14 16 2 C 0.03 1.07 3.55 45.06 0.16 1.23 16 3 H 0.09 2.67 7.93 -2.39 -0.02 2.65 16 4 C 0.10 3.90 3.34 45.79 0.15 4.05 16 5 H 0.07 2.86 7.21 -2.38 -0.02 2.84 16 6 N -0.84 -30.26 9.19 -165.04 -1.52 -31.78 16 7 C 0.06 2.89 2.58 -10.34 -0.03 2.86 16 8 H 0.01 0.39 7.90 -2.39 -0.02 0.37 16 9 C -0.52 -29.64 8.48 25.60 0.22 -29.43 16 10 H 0.05 2.84 7.55 -2.91 -0.02 2.81 16 11 C 0.01 0.72 5.36 84.65 0.45 1.18 16 12 N -0.92 -54.55 12.42 21.45 0.27 -54.28 16 13 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 C 0.07 3.37 5.45 86.65 0.47 3.84 16 18 N -0.54 -21.10 5.54 -884.06 -4.90 -26.00 16 19 C 0.02 0.50 8.32 127.69 1.06 1.56 16 20 H 0.04 1.31 7.59 -2.39 -0.02 1.29 16 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.07 1.81 6.69 -2.38 -0.02 1.80 16 23 H 0.34 9.78 9.06 -89.70 -0.81 8.97 16 24 H 0.34 12.06 8.83 -89.69 -0.79 11.27 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.01 0.71 7.86 -2.39 -0.02 0.69 16 27 H 0.05 2.74 7.65 -2.39 -0.02 2.72 16 28 H 0.03 0.97 6.27 -2.39 -0.01 0.96 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.16 7.75 -2.39 -0.02 2.14 16 Total: -1.00 -62.17 239.62 -1.56 -63.72 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.47 Total: 20.60 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.04 Total: -18.85 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -6.15 Total: -112.06 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.17 -1.56 -63.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.680 kcal (2) G-P(sol) polarization free energy of solvation -62.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds