Wall clock time and date at job start Mon Mar 30 2020 02:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.91122 * 2 1 4 4 C 1.53999 * 109.91751 * 238.89392 * 2 1 3 5 5 H 1.08999 * 110.30735 * 358.14815 * 4 2 1 6 6 N 1.46900 * 110.30464 * 120.31253 * 4 2 1 7 7 C 1.54589 * 105.14011 * 239.22496 * 4 2 1 8 8 H 1.09005 * 110.72307 * 96.58355 * 7 4 2 9 9 C 1.50703 * 110.72424 * 219.68439 * 7 4 2 10 10 H 1.07994 * 119.99991 * 1.73198 * 9 7 4 11 11 C 1.37876 * 119.99928 * 182.01030 * 9 7 4 12 12 N 1.31523 * 120.00159 * 5.91602 * 11 9 7 13 13 Si 1.86796 * 119.99933 * 185.92439 * 11 9 7 14 14 H 1.48506 * 109.47482 * 93.79405 * 13 11 9 15 15 H 1.48505 * 109.47240 * 213.78999 * 13 11 9 16 16 H 1.48499 * 109.47334 * 333.78996 * 13 11 9 17 17 C 1.54938 * 103.08707 * 338.13574 * 7 4 2 18 18 N 1.47907 * 110.07918 * 121.21129 * 2 1 3 19 19 C 1.46904 * 110.99778 * 265.28348 * 18 2 1 20 20 H 1.09003 * 109.47464 * 181.10187 * 1 2 3 21 21 H 1.09001 * 109.47564 * 301.10474 * 1 2 3 22 22 H 1.09007 * 109.46913 * 61.10303 * 1 2 3 23 23 H 1.00907 * 110.99859 * 295.71169 * 6 4 2 24 24 H 1.00900 * 111.00488 * 59.66968 * 6 4 2 25 25 H 0.96996 * 119.99767 * 180.02562 * 12 11 9 26 26 H 1.08993 * 110.67141 * 155.76091 * 17 7 4 27 27 H 1.09004 * 110.66260 * 278.89034 * 17 7 4 28 28 H 1.09008 * 109.46789 * 60.00047 * 19 18 2 29 29 H 1.08998 * 109.46764 * 179.97438 * 19 18 2 30 30 H 1.08997 * 109.47627 * 300.00732 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7480 -1.2397 5 1 1.2228 -1.1398 -1.8252 6 7 2.8820 0.1451 -2.0617 7 6 2.9100 -1.9075 -0.6796 8 1 2.3290 -2.8287 -0.6349 9 6 4.1525 -2.1028 -1.5097 10 1 4.3502 -1.4506 -2.3475 11 6 5.0340 -3.1176 -1.2030 12 7 4.7352 -3.9861 -0.2617 13 14 6.6529 -3.2587 -2.1243 14 1 7.7167 -2.5512 -1.3672 15 1 7.0173 -4.6911 -2.2683 16 1 6.5119 -2.6462 -3.4697 17 6 3.2735 -1.4189 0.7450 18 7 2.0377 -0.7199 1.1881 19 6 2.3244 0.2130 2.2861 20 1 -0.3634 -1.0275 0.0198 21 1 -0.3634 0.5309 0.8799 22 1 -0.3633 0.4966 -0.8998 23 1 2.3335 0.9064 -2.4329 24 1 3.6719 0.4905 -1.5375 25 1 5.3556 -4.6998 -0.0457 26 1 3.4957 -2.2639 1.3966 27 1 4.1145 -0.7262 0.7112 28 1 1.4116 0.7416 2.5613 29 1 2.6958 -0.3426 3.1472 30 1 3.0777 0.9322 1.9647 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:57 Heat of formation + Delta-G solvation = 4.232606 kcal Electronic energy + Delta-G solvation = -11877.127708 eV Core-core repulsion = 9900.073560 eV Total energy + Delta-G solvation = -1977.054148 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.60193 -33.46865 -32.53159 -30.27807 -28.93617 -25.53766 -23.82439 -23.18046 -19.76966 -19.05891 -16.30015 -15.43615 -14.59572 -14.20511 -14.03645 -13.78092 -12.96568 -12.47043 -12.30581 -11.99614 -11.68143 -11.49498 -10.96765 -10.73474 -10.63833 -10.44474 -10.18184 -9.74578 -9.19916 -8.88533 -8.29616 -7.88718 -7.48041 -5.91710 -3.89825 3.37185 3.44641 3.49733 4.52457 4.76797 5.34895 5.42745 5.48568 5.62098 5.77639 5.84179 5.94665 6.12599 6.21414 6.24564 6.35201 6.60722 6.61239 6.86834 7.00135 7.50469 7.60243 7.81726 7.92025 8.06182 8.11615 8.30877 8.63058 9.22373 9.74090 11.19473 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053545 B = 0.013483 C = 0.012093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.803677 B = 2076.223551 C = 2314.808511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.028 3.972 3 H 0.034 0.966 4 C 0.087 3.913 5 H 0.071 0.929 6 N -0.819 5.819 7 C 0.056 3.944 8 H 0.044 0.956 9 C -0.498 4.498 10 H 0.083 0.917 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.273 1.273 17 C 0.051 3.949 18 N -0.526 5.526 19 C 0.021 3.979 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.048 0.952 23 H 0.314 0.686 24 H 0.339 0.661 25 H 0.257 0.743 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 7.741 1.554 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.083 4.083 3 H 0.052 0.948 4 C -0.025 4.025 5 H 0.089 0.911 6 N -0.346 5.346 7 C 0.036 3.964 8 H 0.062 0.938 9 C -0.537 4.537 10 H 0.101 0.899 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.198 1.198 17 C -0.076 4.076 18 N -0.251 5.251 19 C -0.128 4.128 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.152 0.848 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.687 6.571 1.367 8.186 hybrid contribution 1.296 1.235 0.239 1.806 sum -3.391 7.806 1.606 8.661 Atomic orbital electron populations 1.21700 0.95190 1.02019 0.99876 1.23340 0.95661 0.95551 0.93730 0.94804 1.22459 0.95459 0.94720 0.89901 0.91075 1.58892 1.11663 1.22387 1.41707 1.19635 0.94838 0.91991 0.89923 0.93799 1.21319 1.04317 1.14105 1.13954 0.89938 1.25075 0.98393 0.95573 0.95450 1.69999 1.35900 1.15623 1.32048 0.86620 0.84323 0.76897 0.80342 1.21140 1.21629 1.19817 1.23477 0.87585 0.96471 1.00085 1.64726 1.29813 1.24756 1.05788 1.22417 0.99046 0.95377 0.95956 0.91930 0.93818 0.93313 0.87511 0.84794 0.93313 0.90240 0.95543 0.92802 0.91954 0.96504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.32 37.15 0.35 -1.69 16 2 C 0.03 0.52 2.86 -66.64 -0.19 0.33 16 3 H 0.03 0.60 7.52 -51.93 -0.39 0.21 16 4 C 0.09 1.79 3.65 -66.36 -0.24 1.55 16 5 H 0.07 1.46 7.69 -51.93 -0.40 1.06 16 6 N -0.82 -15.66 7.35 -3.52 -0.03 -15.68 16 7 C 0.06 1.39 2.76 -89.91 -0.25 1.14 16 8 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 9 C -0.50 -13.55 7.92 -34.44 -0.27 -13.82 16 10 H 0.08 2.25 6.36 -52.49 -0.33 1.91 16 11 C 0.06 1.56 5.34 -17.82 -0.10 1.46 16 12 N -0.90 -26.12 12.85 55.43 0.71 -25.41 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.05 1.19 5.64 -1.79 -0.01 1.18 16 18 N -0.53 -10.58 5.19 -230.60 -1.20 -11.77 16 19 C 0.02 0.36 9.40 60.07 0.56 0.93 16 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.31 4.98 9.08 -39.29 -0.36 4.63 16 24 H 0.34 6.58 8.61 -39.29 -0.34 6.24 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.08 2.06 7.94 -51.93 -0.41 1.65 16 27 H 0.03 0.63 7.87 -51.93 -0.41 0.23 16 28 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.28 8.01 -51.93 -0.42 -0.14 16 LS Contribution 243.37 15.07 3.67 3.67 Total: -1.00 -28.62 243.37 -6.74 -35.36 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.73 Total: 6.11 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.15 Total: -8.92 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.51 Total: -52.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.62 -6.74 -35.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.589 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds