Wall clock time and date at job start Mon Mar 30 2020 02:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.91122 * 2 1 4 4 C 1.53999 * 109.91751 * 238.89392 * 2 1 3 5 5 H 1.08999 * 110.30735 * 358.14815 * 4 2 1 6 6 N 1.46900 * 110.30464 * 120.31253 * 4 2 1 7 7 C 1.54589 * 105.14011 * 239.22496 * 4 2 1 8 8 H 1.09005 * 110.72307 * 96.58355 * 7 4 2 9 9 C 1.50703 * 110.72424 * 219.68439 * 7 4 2 10 10 H 1.07994 * 119.99991 * 1.73198 * 9 7 4 11 11 C 1.37876 * 119.99928 * 182.01030 * 9 7 4 12 12 N 1.31523 * 120.00159 * 5.91602 * 11 9 7 13 13 Si 1.86796 * 119.99933 * 185.92439 * 11 9 7 14 14 H 1.48506 * 109.47482 * 93.79405 * 13 11 9 15 15 H 1.48505 * 109.47240 * 213.78999 * 13 11 9 16 16 H 1.48499 * 109.47334 * 333.78996 * 13 11 9 17 17 C 1.54938 * 103.08707 * 338.13574 * 7 4 2 18 18 N 1.47907 * 110.07918 * 121.21129 * 2 1 3 19 19 C 1.46904 * 110.99778 * 265.28348 * 18 2 1 20 20 H 1.09003 * 109.47464 * 181.10187 * 1 2 3 21 21 H 1.09001 * 109.47564 * 301.10474 * 1 2 3 22 22 H 1.09007 * 109.46913 * 61.10303 * 1 2 3 23 23 H 1.00907 * 110.99859 * 295.71169 * 6 4 2 24 24 H 1.00900 * 111.00488 * 59.66968 * 6 4 2 25 25 H 0.96996 * 119.99767 * 180.02562 * 12 11 9 26 26 H 1.08993 * 110.67141 * 155.76091 * 17 7 4 27 27 H 1.09004 * 110.66260 * 278.89034 * 17 7 4 28 28 H 1.09008 * 109.46789 * 60.00047 * 19 18 2 29 29 H 1.08998 * 109.46764 * 179.97438 * 19 18 2 30 30 H 1.08997 * 109.47627 * 300.00732 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7480 -1.2397 5 1 1.2228 -1.1398 -1.8252 6 7 2.8820 0.1451 -2.0617 7 6 2.9100 -1.9075 -0.6796 8 1 2.3290 -2.8287 -0.6349 9 6 4.1525 -2.1028 -1.5097 10 1 4.3502 -1.4506 -2.3475 11 6 5.0340 -3.1176 -1.2030 12 7 4.7352 -3.9861 -0.2617 13 14 6.6529 -3.2587 -2.1243 14 1 7.7167 -2.5512 -1.3672 15 1 7.0173 -4.6911 -2.2683 16 1 6.5119 -2.6462 -3.4697 17 6 3.2735 -1.4189 0.7450 18 7 2.0377 -0.7199 1.1881 19 6 2.3244 0.2130 2.2861 20 1 -0.3634 -1.0275 0.0198 21 1 -0.3634 0.5309 0.8799 22 1 -0.3633 0.4966 -0.8998 23 1 2.3335 0.9064 -2.4329 24 1 3.6719 0.4905 -1.5375 25 1 5.3556 -4.6998 -0.0457 26 1 3.4957 -2.2639 1.3966 27 1 4.1145 -0.7262 0.7112 28 1 1.4116 0.7416 2.5613 29 1 2.6958 -0.3426 3.1472 30 1 3.0777 0.9322 1.9647 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:57 Heat of formation + Delta-G solvation = -17.412104 kcal Electronic energy + Delta-G solvation = -11878.066293 eV Core-core repulsion = 9900.073560 eV Total energy + Delta-G solvation = -1977.992733 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.25007 -35.23764 -34.37843 -31.89211 -30.58894 -27.37749 -25.43107 -24.89067 -21.50914 -20.72934 -18.30285 -17.16090 -16.37847 -16.04543 -15.56802 -15.29936 -14.53294 -14.24374 -13.91702 -13.56887 -13.22427 -12.98767 -12.85577 -12.49981 -12.29366 -12.15338 -11.89780 -11.55057 -11.10024 -10.87199 -10.43062 -9.49027 -9.04005 -8.05043 -6.09050 1.43895 1.45637 1.56759 2.49872 3.18036 3.31256 3.89298 3.99880 4.10014 4.34590 4.47061 4.54523 4.64386 4.78737 4.87306 4.92853 4.96303 5.04879 5.20970 5.39609 5.60073 5.75391 5.94164 6.07201 6.29252 6.37211 6.66463 6.87502 7.09203 7.59004 9.06040 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053545 B = 0.013483 C = 0.012093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.803677 B = 2076.223551 C = 2314.808511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 H 0.050 0.950 4 C 0.094 3.906 5 H 0.070 0.930 6 N -0.825 5.825 7 C 0.045 3.955 8 H 0.000 1.000 9 C -0.504 4.504 10 H 0.083 0.917 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.953 3.047 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.069 3.931 18 N -0.538 5.538 19 C 0.021 3.979 20 H 0.047 0.953 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.337 0.663 24 H 0.338 0.662 25 H 0.256 0.744 26 H 0.044 0.956 27 H 0.018 0.982 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 9.608 1.187 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 H 0.068 0.932 4 C -0.018 4.018 5 H 0.088 0.912 6 N -0.355 5.355 7 C 0.026 3.974 8 H 0.018 0.982 9 C -0.542 4.542 10 H 0.101 0.899 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.780 3.220 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.191 1.191 17 C -0.059 4.059 18 N -0.262 5.262 19 C -0.128 4.128 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.072 8.468 0.990 9.920 hybrid contribution 1.357 0.672 0.352 1.554 sum -3.715 9.140 1.342 9.957 Atomic orbital electron populations 1.21664 0.92814 1.01781 1.01941 1.23344 0.97429 0.95475 0.91498 0.93175 1.22251 0.94610 0.93838 0.91148 0.91173 1.58726 1.11923 1.23293 1.41509 1.19537 0.94444 0.92162 0.91271 0.98170 1.21623 1.04961 1.13724 1.13928 0.89889 1.25843 1.01640 0.95500 0.96412 1.70141 1.36975 1.16301 1.33702 0.85616 0.80445 0.76637 0.79309 1.20523 1.21786 1.19137 1.23012 0.88895 0.95508 0.98510 1.64675 1.27738 1.26499 1.07318 1.22497 1.00652 0.94955 0.94706 0.93336 0.92076 0.90959 0.84963 0.84912 0.93534 0.93711 0.96392 0.90009 0.91917 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 9.32 71.98 0.67 -2.82 16 2 C 0.03 1.14 2.86 45.06 0.13 1.26 16 3 H 0.05 1.58 7.52 -2.39 -0.02 1.56 16 4 C 0.09 3.77 3.65 45.79 0.17 3.94 16 5 H 0.07 2.81 7.69 -2.39 -0.02 2.79 16 6 N -0.83 -29.95 7.35 -165.04 -1.21 -31.16 16 7 C 0.05 2.31 2.76 -10.34 -0.03 2.28 16 8 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 9 C -0.50 -27.64 7.92 25.60 0.20 -27.44 16 10 H 0.08 4.48 6.36 -2.91 -0.02 4.46 16 11 C 0.00 0.18 5.34 84.65 0.45 0.64 16 12 N -0.93 -55.76 12.85 21.45 0.28 -55.48 16 13 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 C 0.07 3.28 5.64 86.61 0.49 3.77 16 18 N -0.54 -21.00 5.19 -883.49 -4.58 -25.58 16 19 C 0.02 0.65 9.40 127.69 1.20 1.85 16 20 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.34 9.69 9.08 -89.69 -0.81 8.87 16 24 H 0.34 12.51 8.61 -89.69 -0.77 11.74 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.04 2.42 7.94 -2.39 -0.02 2.40 16 27 H 0.02 0.87 7.87 -2.39 -0.02 0.85 16 28 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 Total: -1.00 -61.80 243.37 -0.68 -62.48 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.46 Total: 19.44 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.28 Total: -16.52 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -5.52 Total: -112.23 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.80 -0.68 -62.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.064 kcal (2) G-P(sol) polarization free energy of solvation -61.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds