Wall clock time and date at job start Mon Mar 30 2020 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.90631 * 2 1 4 4 C 1.53997 * 109.91410 * 238.89174 * 2 1 3 5 5 H 1.09003 * 110.30346 * 122.96158 * 4 2 1 6 6 N 1.46893 * 110.30817 * 0.79346 * 4 2 1 7 7 C 1.54601 * 105.13898 * 241.87440 * 4 2 1 8 8 H 1.08996 * 110.71962 * 263.42371 * 7 4 2 9 9 C 1.50694 * 110.72068 * 140.32027 * 7 4 2 10 10 H 1.08001 * 119.99938 * 275.34631 * 9 7 4 11 11 C 1.37871 * 120.00463 * 95.34670 * 9 7 4 12 12 N 1.31516 * 120.00529 * 180.02562 * 11 9 7 13 13 Si 1.86804 * 119.99682 * 359.97438 * 11 9 7 14 14 H 1.48500 * 109.46776 * 90.00347 * 13 11 9 15 15 H 1.48503 * 109.47108 * 209.99922 * 13 11 9 16 16 H 1.48494 * 109.47507 * 330.00579 * 13 11 9 17 17 C 1.54933 * 102.92147 * 21.95885 * 7 4 2 18 18 N 1.47909 * 109.91263 * 121.30765 * 2 1 3 19 19 C 1.46899 * 111.00284 * 333.50259 * 18 2 1 20 20 H 1.08998 * 109.47472 * 181.10842 * 1 2 3 21 21 H 1.09002 * 109.46826 * 61.10089 * 1 2 3 22 22 H 1.09004 * 109.46558 * 301.10748 * 1 2 3 23 23 H 1.00903 * 111.00069 * 57.34176 * 6 4 2 24 24 H 1.00903 * 110.99955 * 181.29481 * 6 4 2 25 25 H 0.96997 * 120.00033 * 180.02562 * 12 11 9 26 26 H 1.09006 * 110.66509 * 81.01951 * 17 7 4 27 27 H 1.08999 * 110.67040 * 203.97993 * 17 7 4 28 28 H 1.09004 * 109.46813 * 59.99984 * 19 18 2 29 29 H 1.09000 * 109.47529 * 180.02562 * 19 18 2 30 30 H 1.08998 * 109.47150 * 300.00725 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0546 -0.7481 -1.2397 5 1 2.7064 -0.0995 -1.8251 6 7 0.9331 -1.2218 -2.0616 7 6 2.8535 -1.9473 -0.6795 8 1 3.9175 -1.7147 -0.6348 9 6 2.6140 -3.1820 -1.5096 10 1 1.7538 -3.8052 -1.3146 11 6 3.4928 -3.5160 -2.5180 12 7 3.2835 -4.5933 -3.2427 13 14 4.9803 -2.4377 -2.8558 14 1 6.1278 -2.9072 -2.0385 15 1 5.3329 -2.5177 -4.2961 16 1 4.6628 -1.0311 -2.5012 17 6 2.2660 -2.1207 0.7435 18 7 2.0338 -0.7226 1.1882 19 6 1.0592 -0.6743 2.2862 20 1 -0.3634 -1.0274 0.0199 21 1 -0.3633 0.4967 -0.8997 22 1 -0.3632 0.5310 0.8800 23 1 0.3391 -0.4549 -2.3394 24 1 1.2649 -1.7321 -2.8664 25 1 3.9020 -4.8285 -3.9519 26 1 1.3273 -2.6737 0.7074 27 1 2.9809 -2.6211 1.3966 28 1 0.1264 -1.1378 1.9647 29 1 1.4549 -1.2128 3.1473 30 1 0.8730 0.3638 2.5614 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:00 Heat of formation + Delta-G solvation = 13.516588 kcal Electronic energy + Delta-G solvation = -12027.093087 eV Core-core repulsion = 10050.441522 eV Total energy + Delta-G solvation = -1976.651564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.92820 -33.73470 -32.34698 -30.67945 -28.32965 -26.17255 -24.54319 -23.06215 -19.30105 -18.56415 -16.90396 -15.72117 -15.02308 -14.56649 -13.75845 -13.56502 -13.34132 -12.71481 -12.31413 -12.09379 -11.53331 -11.13074 -11.10312 -10.96714 -10.76539 -10.37759 -10.01082 -9.75605 -9.46530 -9.13491 -8.54459 -7.77274 -7.54150 -6.04930 -4.00614 3.27744 3.36926 3.39849 4.42285 4.70617 5.19589 5.35297 5.46234 5.68346 5.77989 5.94309 5.96742 6.09905 6.15128 6.24460 6.31660 6.36263 6.54437 6.83982 6.91088 7.03868 7.21740 7.49303 7.72225 7.78214 8.21714 8.52767 8.65516 9.06523 9.57485 11.07803 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054416 B = 0.014642 C = 0.014103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.433227 B = 1911.783692 C = 1984.905019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 H 0.067 0.933 4 C 0.079 3.921 5 H 0.020 0.980 6 N -0.821 5.821 7 C 0.021 3.979 8 H 0.039 0.961 9 C -0.480 4.480 10 H 0.078 0.922 11 C 0.066 3.934 12 N -0.901 5.901 13 Si 0.871 3.129 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.267 1.267 17 C 0.052 3.948 18 N -0.526 5.526 19 C 0.017 3.983 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.310 0.690 24 H 0.354 0.646 25 H 0.262 0.738 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 8.500 5.133 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 H 0.085 0.915 4 C -0.033 4.033 5 H 0.037 0.963 6 N -0.353 5.353 7 C 0.001 3.999 8 H 0.057 0.943 9 C -0.519 4.519 10 H 0.096 0.904 11 C -0.135 4.135 12 N -0.539 5.539 13 Si 0.699 3.301 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.192 1.192 17 C -0.075 4.075 18 N -0.249 5.249 19 C -0.132 4.132 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.122 0.878 24 H 0.170 0.830 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.863 8.194 5.820 10.450 hybrid contribution 0.505 0.824 -1.324 1.639 sum -2.358 9.018 4.496 10.349 Atomic orbital electron populations 1.22127 0.96678 1.02605 0.99892 1.22472 0.93517 0.97194 0.91163 0.91524 1.22340 0.91947 0.96519 0.92542 0.96259 1.58863 1.21490 1.27502 1.27468 1.20078 0.94206 0.93889 0.91733 0.94274 1.20791 1.10213 1.06538 1.14326 0.90397 1.25067 0.97449 0.94873 0.96126 1.69903 1.37464 1.25044 1.21494 0.86972 0.84198 0.81817 0.77163 1.20267 1.21762 1.19180 1.23217 0.99530 0.87293 0.97466 1.64914 1.40504 1.13391 1.06132 1.22466 0.94895 1.00769 0.95066 0.91125 0.92996 0.94025 0.87822 0.82962 0.92818 0.93726 0.91695 0.95024 0.92328 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 6.83 37.16 0.25 -2.21 16 2 C 0.07 1.20 3.76 -66.63 -0.25 0.95 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.08 1.66 4.01 -66.36 -0.27 1.40 16 5 H 0.02 0.42 7.65 -51.93 -0.40 0.03 16 6 N -0.82 -16.49 7.40 -3.52 -0.03 -16.51 16 7 C 0.02 0.49 2.42 -89.91 -0.22 0.28 16 8 H 0.04 0.96 5.69 -51.93 -0.30 0.66 16 9 C -0.48 -12.98 7.08 -34.45 -0.24 -13.22 16 10 H 0.08 2.35 8.02 -52.49 -0.42 1.92 16 11 C 0.07 1.83 5.47 -17.82 -0.10 1.74 16 12 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 13 Si 0.87 21.28 27.03 -169.99 -4.60 16.68 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.34 6.34 56.52 0.36 -5.98 16 17 C 0.05 1.11 5.98 -1.90 -0.01 1.10 16 18 N -0.53 -9.91 5.54 -230.78 -1.28 -11.19 16 19 C 0.02 0.26 8.32 60.06 0.50 0.76 16 20 H 0.07 1.27 7.28 -51.93 -0.38 0.89 16 21 H 0.05 0.76 6.81 -51.93 -0.35 0.40 16 22 H 0.04 0.59 6.69 -51.93 -0.35 0.24 16 23 H 0.31 5.27 7.29 -39.29 -0.29 4.98 16 24 H 0.35 7.82 7.86 -39.29 -0.31 7.51 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.04 0.99 7.84 -51.93 -0.41 0.58 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.49 6.27 -51.93 -0.33 0.16 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 LS Contribution 230.25 15.07 3.47 3.47 Total: -1.00 -28.61 230.25 -6.36 -34.97 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.37 Total: 7.83 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.33 Total: -9.22 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.53 Total: -53.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.60 Total: 16.68 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.61 -6.36 -34.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.484 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds