Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00008 * 2 1 3 5 5 C 1.52996 * 109.47165 * 300.00105 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 8 8 C 1.50696 * 109.47306 * 180.02562 * 6 5 4 9 9 H 1.08003 * 119.99953 * 239.99831 * 8 6 5 10 10 C 1.37877 * 120.00530 * 59.99166 * 8 6 5 11 11 N 1.31515 * 119.99491 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00456 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46948 * 90.00466 * 12 10 8 14 14 H 1.48492 * 109.47192 * 210.00299 * 12 10 8 15 15 H 1.48503 * 109.47081 * 330.00765 * 12 10 8 16 16 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 17 17 H 1.09000 * 109.47140 * 59.99976 * 16 6 5 18 18 O 1.42906 * 109.47139 * 180.02562 * 16 6 5 19 19 C 1.52999 * 109.46991 * 119.99445 * 2 1 3 20 20 H 1.09000 * 109.47611 * 300.00488 * 1 2 3 21 21 H 1.09001 * 109.47289 * 59.99916 * 1 2 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 4 2 1 24 24 H 1.09001 * 109.47375 * 60.00133 * 4 2 1 25 25 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 26 26 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 27 27 H 0.97010 * 119.99733 * 179.97438 * 11 10 8 28 28 H 0.96704 * 113.99354 * 180.02562 * 18 16 6 29 29 H 1.08993 * 109.47839 * 300.00447 * 19 2 1 30 30 H 1.09000 * 109.47160 * 180.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0399 -2.8849 0.0001 7 1 3.1299 -2.8849 0.0001 8 6 1.5382 -4.3059 -0.0002 9 1 0.9172 -4.6595 0.8096 10 6 1.8717 -5.1547 -1.0343 11 7 2.6281 -4.7242 -2.0203 12 14 1.2491 -6.9159 -1.0350 13 1 -0.0588 -6.9783 -1.7357 14 1 2.2275 -7.7865 -1.7347 15 1 1.0834 -7.3828 0.3649 16 6 1.5299 -2.1637 1.2493 17 1 0.4399 -2.1637 1.2492 18 8 2.0067 -2.8370 2.4161 19 6 2.0399 -0.7211 1.2493 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 -0.7216 -1.2490 24 1 1.6767 -0.2074 -2.1392 25 1 1.8937 -2.6777 -2.1389 26 1 0.4400 -2.1637 -1.2492 27 1 2.8631 -5.3215 -2.7477 28 1 1.7210 -2.4336 3.2473 29 1 1.6766 -0.2074 2.1393 30 1 3.1299 -0.7207 1.2496 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -77.688630 kcal Electronic energy + Delta-G solvation = -11955.443291 eV Core-core repulsion = 9942.544020 eV Total energy + Delta-G solvation = -2012.899271 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.55696 -34.96337 -33.12198 -30.06813 -28.67431 -26.64660 -24.18177 -21.50687 -20.44375 -17.78334 -16.34491 -16.28129 -14.81082 -14.22070 -13.84500 -13.25219 -13.07924 -12.54056 -11.93918 -11.55703 -11.40208 -11.24449 -10.87651 -10.71254 -10.48807 -10.32596 -10.06703 -9.73470 -9.47968 -9.12627 -8.85349 -8.44635 -8.19287 -5.88155 -3.91400 3.37073 3.43416 3.48767 4.53201 5.13798 5.39582 5.43630 5.46029 5.66294 5.92634 6.08606 6.18592 6.20659 6.25121 6.44888 6.48132 6.55457 6.70523 6.85532 6.90229 7.06036 7.25688 7.49410 7.84531 8.02485 8.18058 8.52988 8.67884 9.11227 9.71080 11.18062 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050009 B = 0.014203 C = 0.012460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.760143 B = 1970.891744 C = 2246.653456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.054 0.946 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.058 3.942 7 H 0.029 0.971 8 C -0.496 4.496 9 H 0.056 0.944 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.110 3.890 17 H 0.042 0.958 18 O -0.556 6.556 19 C -0.144 4.144 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.258 0.742 28 H 0.350 0.650 29 H 0.045 0.955 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 7.722 3.407 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.155 4.155 5 C -0.147 4.147 6 C 0.039 3.961 7 H 0.048 0.952 8 C -0.534 4.534 9 H 0.074 0.926 10 C -0.144 4.144 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.200 1.200 16 C 0.051 3.949 17 H 0.060 0.940 18 O -0.358 6.358 19 C -0.182 4.182 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.193 0.807 29 H 0.064 0.936 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.570 7.257 2.775 8.183 hybrid contribution -0.541 -0.495 0.357 0.816 sum -3.111 6.762 3.132 8.075 Atomic orbital electron populations 1.21946 0.95937 1.02627 1.00219 1.21013 0.95530 0.97950 0.95882 0.92749 1.21695 1.00099 0.98415 0.95267 1.21642 0.98587 0.91533 1.02980 1.18638 0.96745 0.93554 0.87142 0.95248 1.21143 1.30763 0.95496 1.06015 0.92587 1.24959 0.95327 0.98317 0.95752 1.69879 1.37411 1.35445 1.10857 0.86618 0.78401 0.85108 0.78016 1.20883 1.21377 1.19984 1.22164 0.96145 0.89087 0.87464 0.94021 1.86748 1.77398 1.56657 1.14996 1.22317 1.01213 0.97887 0.96813 0.93842 0.93354 0.91230 0.92877 0.93697 0.88626 0.94278 0.93221 0.80676 0.93584 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.50 37.16 0.32 -2.04 16 2 C -0.09 -1.44 3.19 -90.62 -0.29 -1.73 16 3 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.12 -2.27 5.45 -26.73 -0.15 -2.42 16 5 C -0.11 -2.58 4.71 -26.73 -0.13 -2.71 16 6 C 0.06 1.48 1.84 -91.77 -0.17 1.32 16 7 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.50 -14.21 8.23 -34.44 -0.28 -14.49 16 9 H 0.06 1.63 7.70 -52.48 -0.40 1.22 16 10 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 11 N -0.90 -26.23 11.32 55.43 0.63 -25.60 16 12 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 16 C 0.11 2.36 2.58 -26.73 -0.07 2.29 16 17 H 0.04 0.89 6.43 -51.93 -0.33 0.55 16 18 O -0.56 -12.00 12.91 -35.23 -0.45 -12.45 16 19 C -0.14 -2.59 5.07 -26.73 -0.14 -2.73 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 1.22 4.81 -51.93 -0.25 0.97 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 26 H 0.04 0.90 6.43 -51.93 -0.33 0.57 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.35 5.51 9.08 45.56 0.41 5.93 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 233.92 15.07 3.53 3.53 Total: -1.00 -30.34 233.92 -6.06 -36.39 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.74 Total: 2.07 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -1.00 Total: -21.00 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.63 Total: -25.60 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.45 Total: -12.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.34 -6.06 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.294 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds