Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47196 * 240.00033 * 2 1 3 5 5 C 1.52999 * 109.47196 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46988 * 59.99600 * 5 4 2 7 7 H 1.09002 * 109.46907 * 60.00257 * 6 5 4 8 8 C 1.50708 * 109.47096 * 179.97438 * 6 5 4 9 9 H 1.07997 * 119.99492 * 94.43046 * 8 6 5 10 10 C 1.37876 * 120.00013 * 274.43889 * 8 6 5 11 11 N 1.31510 * 120.00214 * 6.50168 * 10 8 6 12 12 Si 1.86797 * 119.99598 * 186.50787 * 10 8 6 13 13 H 1.48498 * 109.47107 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.47073 * 299.99559 * 12 10 8 15 15 H 1.48503 * 109.47236 * 59.99591 * 12 10 8 16 16 C 1.52992 * 109.47567 * 299.99986 * 6 5 4 17 17 H 1.09002 * 109.47228 * 300.00074 * 16 6 5 18 18 O 1.42899 * 109.47493 * 179.97438 * 16 6 5 19 19 C 1.53003 * 109.46988 * 119.99633 * 2 1 3 20 20 H 1.09001 * 109.46965 * 300.00099 * 1 2 3 21 21 H 1.09001 * 109.47368 * 60.00085 * 1 2 3 22 22 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47075 * 299.99974 * 4 2 1 24 24 H 1.09001 * 109.47058 * 59.99692 * 4 2 1 25 25 H 1.09002 * 109.47087 * 299.99967 * 5 4 2 26 26 H 1.08995 * 109.47366 * 179.97438 * 5 4 2 27 27 H 0.97002 * 119.99918 * 355.07106 * 11 10 8 28 28 H 0.96693 * 114.00282 * 180.02562 * 18 16 6 29 29 H 1.09002 * 109.46907 * 60.00257 * 19 2 1 30 30 H 1.08995 * 109.47215 * 300.00274 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4434 0.0004 7 1 3.7157 -2.4709 0.0002 8 6 5.5865 -1.4445 0.0004 9 1 6.1270 -0.6734 0.5292 10 6 6.2752 -2.4298 -0.6748 11 7 5.6234 -3.2927 -1.4231 12 14 8.1340 -2.5390 -0.5264 13 1 8.6298 -3.6764 -1.3424 14 1 8.7446 -1.2762 -1.0140 15 1 8.5055 -2.7517 0.8956 16 6 3.5695 -0.7221 1.2496 17 1 3.9332 0.3054 1.2498 18 8 4.0448 -1.3964 2.4164 19 6 2.0400 -0.7212 1.2493 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7489 -1.2492 24 1 1.6766 -0.2074 -2.1392 25 1 3.9337 0.3057 -1.2487 26 1 3.9334 -1.2360 -2.1386 27 1 4.6537 -3.2813 -1.4440 28 1 3.7592 -0.9932 3.2475 29 1 1.6766 -1.7489 1.2493 30 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823613.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = -86.757256 kcal Electronic energy + Delta-G solvation = -11810.215766 eV Core-core repulsion = 9796.923250 eV Total energy + Delta-G solvation = -2013.292516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.47853 -35.06854 -33.49060 -30.56857 -28.83763 -26.42074 -23.38203 -21.71336 -20.30121 -19.11279 -16.78257 -16.25661 -14.56595 -14.01018 -13.69994 -13.64124 -13.49836 -12.19815 -12.13466 -11.91859 -11.69051 -11.30911 -11.21706 -10.75279 -10.38307 -10.17600 -10.10940 -9.98636 -9.75423 -9.18683 -8.98987 -8.36321 -8.08896 -6.22908 -3.89297 3.50307 3.54953 3.72112 4.63754 4.98593 5.19376 5.31809 5.45826 5.52725 5.76172 5.92736 6.01377 6.03236 6.11759 6.16486 6.22559 6.34004 6.50902 6.58430 6.77563 6.79491 6.98619 7.17145 7.44451 7.65069 8.33079 8.56317 8.59944 9.02180 9.79703 11.17121 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058805 B = 0.012671 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.032299 B = 2209.226321 C = 2510.697890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.040 3.960 7 H 0.035 0.965 8 C -0.575 4.575 9 H 0.045 0.955 10 C 0.017 3.983 11 N -0.918 5.918 12 Si 1.067 2.933 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.289 1.289 16 C 0.117 3.883 17 H 0.036 0.964 18 O -0.550 6.550 19 C -0.145 4.145 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.268 0.732 28 H 0.350 0.650 29 H 0.063 0.937 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 6.029 3.264 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.145 4.145 6 C 0.021 3.979 7 H 0.053 0.947 8 C -0.614 4.614 9 H 0.064 0.936 10 C -0.186 4.186 11 N -0.555 5.555 12 Si 0.896 3.104 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.215 1.215 16 C 0.058 3.942 17 H 0.054 0.946 18 O -0.352 6.352 19 C -0.183 4.183 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.194 0.806 29 H 0.081 0.919 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.821 4.803 2.239 7.872 hybrid contribution -1.699 1.287 1.032 2.368 sum -7.520 6.089 3.271 10.214 Atomic orbital electron populations 1.21837 0.96051 1.01432 1.00849 1.21036 0.94457 0.99418 0.95603 0.91772 1.21724 0.98350 0.99628 0.95823 1.21714 0.91505 1.00310 1.00968 1.18815 0.96604 0.94976 0.87530 0.94725 1.21806 0.90570 1.13527 1.35468 0.93636 1.25747 1.06768 0.93152 0.92981 1.70797 1.10166 1.38466 1.36040 0.83578 0.74717 0.75977 0.76128 1.20966 1.21682 1.21535 1.21935 0.89504 0.95077 0.87642 0.94602 1.86777 1.76738 1.56895 1.14774 1.22381 0.98467 1.00632 0.96821 0.93308 0.93058 0.92918 0.92666 0.93356 0.93629 0.92100 0.92036 0.80640 0.91869 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 2 C -0.09 -1.41 2.72 -90.62 -0.25 -1.66 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -2.17 5.20 -26.73 -0.14 -2.31 16 5 C -0.11 -2.43 5.10 -26.73 -0.14 -2.56 16 6 C 0.04 1.01 1.47 -91.77 -0.14 0.88 16 7 H 0.03 0.98 6.95 -51.93 -0.36 0.62 16 8 C -0.58 -16.74 7.96 -34.44 -0.27 -17.02 16 9 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 10 C 0.02 0.49 5.45 -17.82 -0.10 0.39 16 11 N -0.92 -28.42 13.63 55.43 0.76 -27.66 16 12 Si 1.07 26.30 29.91 -169.99 -5.08 21.21 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.12 2.55 2.89 -26.76 -0.08 2.47 16 17 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 18 O -0.55 -12.17 12.94 -35.23 -0.46 -12.63 16 19 C -0.15 -2.56 4.82 -26.75 -0.13 -2.69 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.51 7.75 -51.93 -0.40 1.11 16 27 H 0.27 8.25 6.33 -40.82 -0.26 7.99 16 28 H 0.35 5.64 9.08 45.56 0.41 6.06 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 241.96 15.07 3.65 3.65 Total: -1.00 -31.97 241.96 -6.07 -38.04 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.04 Total: 1.46 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.89 Total: -24.08 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.76 Total: -27.66 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.46 Total: -12.63 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.08 Total: 21.21 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.97 -6.07 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823613.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.713 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds