Wall clock time and date at job start Mon Mar 30 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47196 * 240.00033 * 2 1 3 5 5 C 1.52999 * 109.47196 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46988 * 59.99600 * 5 4 2 7 7 H 1.09002 * 109.46907 * 60.00257 * 6 5 4 8 8 C 1.50708 * 109.47096 * 179.97438 * 6 5 4 9 9 H 1.07997 * 119.99492 * 94.43046 * 8 6 5 10 10 C 1.37876 * 120.00013 * 274.43889 * 8 6 5 11 11 N 1.31510 * 120.00214 * 6.50168 * 10 8 6 12 12 Si 1.86797 * 119.99598 * 186.50787 * 10 8 6 13 13 H 1.48498 * 109.47107 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.47073 * 299.99559 * 12 10 8 15 15 H 1.48503 * 109.47236 * 59.99591 * 12 10 8 16 16 C 1.52992 * 109.47567 * 299.99986 * 6 5 4 17 17 H 1.09002 * 109.47228 * 300.00074 * 16 6 5 18 18 O 1.42899 * 109.47493 * 179.97438 * 16 6 5 19 19 C 1.53003 * 109.46988 * 119.99633 * 2 1 3 20 20 H 1.09001 * 109.46965 * 300.00099 * 1 2 3 21 21 H 1.09001 * 109.47368 * 60.00085 * 1 2 3 22 22 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47075 * 299.99974 * 4 2 1 24 24 H 1.09001 * 109.47058 * 59.99692 * 4 2 1 25 25 H 1.09002 * 109.47087 * 299.99967 * 5 4 2 26 26 H 1.08995 * 109.47366 * 179.97438 * 5 4 2 27 27 H 0.97002 * 119.99918 * 355.07106 * 11 10 8 28 28 H 0.96693 * 114.00282 * 180.02562 * 18 16 6 29 29 H 1.09002 * 109.46907 * 60.00257 * 19 2 1 30 30 H 1.08995 * 109.47215 * 300.00274 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4434 0.0004 7 1 3.7157 -2.4709 0.0002 8 6 5.5865 -1.4445 0.0004 9 1 6.1270 -0.6734 0.5292 10 6 6.2752 -2.4298 -0.6748 11 7 5.6234 -3.2927 -1.4231 12 14 8.1340 -2.5390 -0.5264 13 1 8.6298 -3.6764 -1.3424 14 1 8.7446 -1.2762 -1.0140 15 1 8.5055 -2.7517 0.8956 16 6 3.5695 -0.7221 1.2496 17 1 3.9332 0.3054 1.2498 18 8 4.0448 -1.3964 2.4164 19 6 2.0400 -0.7212 1.2493 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7489 -1.2492 24 1 1.6766 -0.2074 -2.1392 25 1 3.9337 0.3057 -1.2487 26 1 3.9334 -1.2360 -2.1386 27 1 4.6537 -3.2813 -1.4440 28 1 3.7592 -0.9932 3.2475 29 1 1.6766 -1.7489 1.2493 30 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823613.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:23 Heat of formation + Delta-G solvation = -109.146704 kcal Electronic energy + Delta-G solvation = -11811.186645 eV Core-core repulsion = 9796.923250 eV Total energy + Delta-G solvation = -2014.263395 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.12082 -36.68959 -35.50067 -32.37693 -30.45288 -28.07429 -25.34142 -23.37402 -21.94439 -20.72649 -18.92970 -17.95726 -16.18654 -15.72104 -15.56664 -15.43350 -14.93507 -13.79591 -13.58736 -13.54504 -13.36805 -12.96142 -12.88874 -12.61989 -11.97606 -11.95899 -11.85639 -11.52926 -11.38488 -11.00643 -10.78168 -10.49601 -10.17102 -8.57701 -6.24110 1.49818 1.59558 1.78073 2.58466 3.21765 3.52555 3.82406 3.92872 4.12598 4.30924 4.40179 4.53861 4.65439 4.68120 4.75525 4.86121 4.92251 5.06224 5.15814 5.20883 5.24460 5.43522 5.46766 5.55987 5.69301 6.12886 6.26584 6.67487 7.15498 7.52613 8.82421 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058805 B = 0.012671 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.032299 B = 2209.226321 C = 2510.697890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.098 4.098 6 C 0.031 3.969 7 H -0.005 1.005 8 C -0.589 4.589 9 H 0.036 0.964 10 C -0.039 4.039 11 N -0.942 5.942 12 Si 1.112 2.888 13 H -0.283 1.283 14 H -0.269 1.269 15 H -0.277 1.277 16 C 0.118 3.882 17 H 0.038 0.962 18 O -0.579 6.579 19 C -0.135 4.135 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.026 0.974 27 H 0.256 0.744 28 H 0.378 0.622 29 H 0.050 0.950 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 7.538 4.054 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.137 4.137 6 C 0.012 3.988 7 H 0.013 0.987 8 C -0.627 4.627 9 H 0.055 0.945 10 C -0.235 4.235 11 N -0.581 5.581 12 Si 0.934 3.066 13 H -0.209 1.209 14 H -0.194 1.194 15 H -0.203 1.203 16 C 0.060 3.940 17 H 0.056 0.944 18 O -0.385 6.385 19 C -0.173 4.173 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.225 0.775 29 H 0.069 0.931 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.779 6.339 3.050 9.770 hybrid contribution -1.407 0.829 0.832 1.833 sum -8.186 7.168 3.883 11.553 Atomic orbital electron populations 1.21770 0.93086 1.01942 1.02684 1.21046 0.96842 0.99090 0.93278 0.90801 1.21661 0.94726 0.99963 0.98563 1.21501 0.94971 0.99217 0.97988 1.18849 0.94979 0.93802 0.91142 0.98671 1.22207 0.92816 1.13071 1.34610 0.94513 1.27188 1.10959 0.92884 0.92500 1.70912 1.09532 1.39795 1.37842 0.83006 0.69984 0.76857 0.76746 1.20893 1.19429 1.20298 1.21798 0.92370 0.94016 0.85860 0.94360 1.86691 1.77605 1.57879 1.16311 1.22272 0.95004 1.00730 0.99283 0.91234 0.91555 0.93106 0.93681 0.90951 0.93368 0.95494 0.93388 0.77541 0.93137 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 2 C -0.08 -2.49 2.72 -10.79 -0.03 -2.52 16 3 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.11 -3.98 5.20 30.59 0.16 -3.82 16 5 C -0.10 -4.54 5.10 30.59 0.16 -4.39 16 6 C 0.03 1.63 1.47 -11.54 -0.02 1.61 16 7 H 0.00 -0.30 6.95 -2.39 -0.02 -0.31 16 8 C -0.59 -34.99 7.96 25.60 0.20 -34.79 16 9 H 0.04 2.19 7.82 -2.91 -0.02 2.16 16 10 C -0.04 -2.33 5.45 84.66 0.46 -1.87 16 11 N -0.94 -60.32 13.63 21.45 0.29 -60.03 16 12 Si 1.11 53.31 29.91 68.60 2.05 55.36 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 C 0.12 5.04 2.89 30.58 0.09 5.13 16 17 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 18 O -0.58 -25.19 12.94 -148.98 -1.93 -27.12 16 19 C -0.14 -4.45 4.82 30.58 0.15 -4.30 16 20 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.03 1.38 7.75 -2.39 -0.02 1.36 16 27 H 0.26 16.53 6.33 -92.71 -0.59 15.95 16 28 H 0.38 11.43 9.08 -74.06 -0.67 10.76 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.66 241.96 2.86 -67.80 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.61 Total: 11.36 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 1.83 Total: -47.38 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.29 Total: -60.03 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.93 Total: -27.12 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -70.66 2.86 -67.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823613.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.345 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds