Wall clock time and date at job start Mon Mar 30 2020 01:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47362 * 2 1 4 4 C 1.52995 * 109.47038 * 239.99415 * 2 1 3 5 5 C 1.53008 * 109.46970 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47309 * 60.00081 * 5 4 2 7 7 H 1.08997 * 109.47313 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46953 * 60.00035 * 6 5 4 9 9 H 1.07999 * 119.99485 * 267.46330 * 8 6 5 10 10 C 1.37867 * 119.99914 * 87.46480 * 8 6 5 11 11 N 1.31515 * 120.00423 * 353.76802 * 10 8 6 12 12 Si 1.86802 * 120.00244 * 173.48836 * 10 8 6 13 13 H 1.48508 * 109.46631 * 60.00399 * 12 10 8 14 14 H 1.48500 * 109.47437 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47119 * 300.00974 * 12 10 8 16 16 C 1.53003 * 109.46748 * 300.00235 * 6 5 4 17 17 H 1.09002 * 109.47311 * 299.99775 * 16 6 5 18 18 O 1.42900 * 109.46723 * 179.97438 * 16 6 5 19 19 C 1.52994 * 109.47283 * 59.99912 * 16 6 5 20 20 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47008 * 300.00536 * 1 2 3 22 22 H 1.09007 * 109.46528 * 60.00061 * 1 2 3 23 23 H 1.08994 * 109.47289 * 60.00768 * 4 2 1 24 24 H 1.09002 * 109.47459 * 300.00380 * 4 2 1 25 25 H 1.09002 * 109.46925 * 300.00199 * 5 4 2 26 26 H 1.09000 * 109.47104 * 180.02562 * 5 4 2 27 27 H 0.97002 * 119.99904 * 354.28906 * 11 10 8 28 28 H 0.96696 * 114.00220 * 179.97438 * 18 16 6 29 29 H 1.09000 * 109.46979 * 179.97438 * 19 16 6 30 30 H 1.09001 * 109.47386 * 60.00141 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5701 -0.7219 -1.2488 6 6 4.0796 -1.4434 0.0005 7 1 5.1695 -1.4434 0.0010 8 6 3.5767 -2.8641 0.0003 9 1 2.6531 -3.1100 0.5031 10 6 4.2958 -3.8497 -0.6418 11 7 5.3532 -3.5326 -1.3566 12 14 3.7727 -5.6366 -0.4903 13 1 2.3943 -5.7954 -1.0198 14 1 4.7040 -6.4927 -1.2681 15 1 3.8040 -6.0421 0.9379 16 6 3.5695 -0.7220 1.2496 17 1 3.9331 0.3056 1.2498 18 8 4.0449 -1.3962 2.4165 19 6 2.0395 -0.7215 1.2493 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8901 23 1 1.6768 -0.2076 -2.1391 24 1 1.6766 -1.7490 -1.2491 25 1 3.9337 0.3057 -1.2486 26 1 3.9334 -1.2354 -2.1389 27 1 5.5795 -2.6004 -1.5006 28 1 3.7598 -0.9925 3.2476 29 1 1.6762 -0.2080 2.1394 30 1 1.6758 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:26 Heat of formation + Delta-G solvation = -104.487599 kcal Electronic energy + Delta-G solvation = -11995.324308 eV Core-core repulsion = 9981.262947 eV Total energy + Delta-G solvation = -2014.061361 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19198 -36.66113 -35.25415 -32.33323 -30.38986 -27.56596 -25.96864 -23.32870 -21.90248 -20.85869 -18.21584 -17.82782 -16.57961 -15.71053 -15.55350 -15.06726 -14.84299 -14.19942 -13.61998 -13.44718 -13.26872 -12.77319 -12.60900 -12.43344 -12.20386 -11.94800 -11.88070 -11.38392 -11.32700 -10.93910 -10.61140 -10.34025 -10.17792 -8.48614 -6.14273 1.51276 1.60281 1.78151 2.62363 3.27656 3.60342 3.92742 3.93920 4.19968 4.37754 4.50251 4.58123 4.67913 4.75220 4.80170 4.89390 5.00209 5.11011 5.18844 5.31124 5.39059 5.48698 5.54910 5.65717 5.70314 6.22115 6.35404 6.74377 7.17897 7.60616 8.90516 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.015443 C = 0.014488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.986448 B = 1812.699662 C = 1932.120363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.074 0.926 4 C -0.097 4.097 5 C -0.100 4.100 6 C 0.022 3.978 7 H -0.011 1.011 8 C -0.556 4.556 9 H 0.047 0.953 10 C -0.044 4.044 11 N -0.951 5.951 12 Si 1.106 2.894 13 H -0.269 1.269 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.117 3.883 17 H 0.041 0.959 18 O -0.579 6.579 19 C -0.128 4.128 20 H 0.044 0.956 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.255 0.745 28 H 0.377 0.623 29 H 0.075 0.925 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 7.354 3.920 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.134 4.134 5 C -0.138 4.138 6 C 0.003 3.997 7 H 0.007 0.993 8 C -0.594 4.594 9 H 0.065 0.935 10 C -0.239 4.239 11 N -0.591 5.591 12 Si 0.929 3.071 13 H -0.194 1.194 14 H -0.215 1.215 15 H -0.205 1.205 16 C 0.059 3.941 17 H 0.059 0.941 18 O -0.385 6.385 19 C -0.165 4.165 20 H 0.064 0.936 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.224 0.776 29 H 0.094 0.906 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.521 5.423 3.062 10.554 hybrid contribution -0.087 1.750 0.639 1.865 sum -8.608 7.173 3.701 11.800 Atomic orbital electron populations 1.21759 0.93641 1.01609 1.02460 1.21014 0.96549 0.98742 0.93715 0.90754 1.21401 0.94332 1.00097 0.97580 1.21479 0.97050 0.97387 0.97919 1.18918 0.93973 0.95517 0.91248 0.99320 1.22004 1.09396 0.93915 1.34101 0.93523 1.27050 0.94178 1.09069 0.93644 1.70888 1.27793 1.20301 1.40069 0.83081 0.75994 0.71356 0.76657 1.19404 1.21452 1.20487 1.21786 0.93675 0.92811 0.85842 0.94107 1.86697 1.77188 1.58312 1.16310 1.22139 0.95030 1.00882 0.98471 0.93636 0.91334 0.91643 0.91904 0.93549 0.93558 0.95611 0.93513 0.77585 0.90626 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.78 16 2 C -0.08 -2.56 2.72 -10.79 -0.03 -2.59 16 3 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.10 -3.69 4.98 30.60 0.15 -3.53 16 5 C -0.10 -4.52 5.34 30.60 0.16 -4.36 16 6 C 0.02 1.15 1.96 -11.54 -0.02 1.12 16 7 H -0.01 -0.69 7.02 -2.39 -0.02 -0.70 16 8 C -0.56 -31.55 6.39 25.60 0.16 -31.39 16 9 H 0.05 2.64 6.08 -2.91 -0.02 2.62 16 10 C -0.04 -2.59 5.45 84.65 0.46 -2.12 16 11 N -0.95 -60.69 13.55 21.44 0.29 -60.40 16 12 Si 1.11 52.91 29.91 68.60 2.05 54.96 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 C 0.12 4.91 3.15 30.59 0.10 5.01 16 17 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 18 O -0.58 -24.91 12.94 -148.98 -1.93 -26.84 16 19 C -0.13 -4.48 4.60 30.59 0.14 -4.34 16 20 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.05 2.02 7.22 -2.39 -0.02 2.00 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.03 1.29 7.62 -2.39 -0.02 1.27 16 27 H 0.25 16.40 6.32 -92.71 -0.59 15.82 16 28 H 0.38 11.31 9.08 -74.06 -0.67 10.64 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.13 6.29 -2.39 -0.02 2.11 16 Total: -1.00 -69.02 236.26 2.82 -66.20 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.62 Total: 11.06 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 1.79 Total: -44.99 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.29 Total: -60.40 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.93 Total: -26.84 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.05 Total: 54.96 kcal Total: -69.02 2.82 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds