Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47331 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99839 * 2 1 3 5 5 C 1.53002 * 109.47209 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46930 * 59.99977 * 5 4 2 7 7 H 1.08991 * 109.47367 * 60.00367 * 6 5 4 8 8 C 1.50707 * 109.46870 * 180.02562 * 6 5 4 9 9 H 1.07998 * 119.99745 * 116.29046 * 8 6 5 10 10 C 1.37871 * 120.00092 * 296.28679 * 8 6 5 11 11 N 1.31519 * 119.99859 * 352.49104 * 10 8 6 12 12 Si 1.86795 * 120.00281 * 172.48602 * 10 8 6 13 13 H 1.48500 * 109.47477 * 265.09310 * 12 10 8 14 14 H 1.48500 * 109.47039 * 25.09005 * 12 10 8 15 15 H 1.48498 * 109.47362 * 145.09095 * 12 10 8 16 16 C 1.53001 * 109.47193 * 300.00033 * 6 5 4 17 17 H 1.09003 * 109.47050 * 180.02562 * 16 6 5 18 18 O 1.42904 * 109.47373 * 300.00184 * 16 6 5 19 19 C 1.52997 * 109.46889 * 60.00106 * 16 6 5 20 20 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47072 * 299.99957 * 1 2 3 22 22 H 1.08996 * 109.47437 * 60.00358 * 1 2 3 23 23 H 1.09003 * 109.47050 * 60.00018 * 4 2 1 24 24 H 1.08995 * 109.47265 * 300.00201 * 4 2 1 25 25 H 1.09004 * 109.47075 * 300.00068 * 5 4 2 26 26 H 1.09002 * 109.47392 * 180.02562 * 5 4 2 27 27 H 0.97006 * 120.00069 * 179.97438 * 11 10 8 28 28 H 0.96690 * 113.99863 * 180.02562 * 18 16 6 29 29 H 1.09002 * 109.47072 * 179.97438 * 19 16 6 30 30 H 1.09004 * 109.47209 * 60.00046 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7208 -1.2496 6 6 4.0804 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0001 8 6 5.5875 -1.4406 -0.0005 9 1 6.1271 -0.9211 0.7775 10 6 6.2773 -2.1028 -0.9937 11 7 5.6286 -2.8566 -1.8544 12 14 8.1331 -1.9294 -1.1170 13 1 8.4666 -0.8567 -2.0883 14 1 8.6873 -1.5802 0.2157 15 1 8.7208 -3.2134 -1.5765 16 6 3.5705 -0.7203 1.2489 17 1 3.9346 -1.2337 2.1389 18 8 4.0463 0.6271 1.2486 19 6 2.0405 -0.7209 1.2492 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.6765 -0.2075 -2.1392 24 1 1.6766 -1.7489 -1.2492 25 1 3.9329 0.3070 -1.2499 26 1 3.9333 -1.2342 -2.1399 27 1 6.1139 -3.3223 -2.5534 28 1 3.7613 1.1450 2.0137 29 1 1.6772 -0.2074 2.1394 30 1 1.6775 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823617.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -81.428007 kcal Electronic energy + Delta-G solvation = -11881.540473 eV Core-core repulsion = 9868.479051 eV Total energy + Delta-G solvation = -2013.061422 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.40355 -34.55256 -33.21580 -30.51842 -28.90382 -26.62601 -23.53295 -21.54039 -20.13671 -18.68025 -16.26700 -15.99482 -14.63224 -14.02124 -13.88132 -13.51484 -12.99486 -12.35298 -11.80517 -11.75337 -11.54627 -11.16360 -10.91977 -10.77012 -10.51194 -10.24835 -10.09330 -9.74590 -9.61255 -9.05533 -8.68442 -8.45977 -8.21819 -5.90848 -3.90342 3.37918 3.44415 3.48599 4.53922 5.20372 5.40599 5.43310 5.52157 5.53385 5.90883 6.03996 6.14619 6.24314 6.36839 6.41148 6.46996 6.58483 6.70710 6.75646 6.95840 7.07358 7.35700 7.54765 7.83810 8.05972 8.13291 8.50024 8.69633 9.12222 9.71353 11.18119 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063737 B = 0.012733 C = 0.011451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.199493 B = 2198.499866 C = 2444.539114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.101 4.101 6 C 0.057 3.943 7 H 0.039 0.961 8 C -0.498 4.498 9 H 0.057 0.943 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.275 1.275 15 H -0.289 1.289 16 C 0.111 3.889 17 H 0.037 0.963 18 O -0.549 6.549 19 C -0.144 4.144 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.258 0.742 28 H 0.348 0.652 29 H 0.045 0.955 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 4.149 3.949 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.139 4.139 6 C 0.038 3.962 7 H 0.057 0.943 8 C -0.537 4.537 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.534 5.534 12 Si 0.717 3.283 13 H -0.209 1.209 14 H -0.200 1.200 15 H -0.215 1.215 16 C 0.052 3.948 17 H 0.055 0.945 18 O -0.351 6.351 19 C -0.182 4.182 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.191 0.809 29 H 0.064 0.936 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.943 3.816 3.221 8.552 hybrid contribution 0.683 0.187 0.388 0.807 sum -6.260 4.004 3.609 8.261 Atomic orbital electron populations 1.21870 0.96784 1.01083 1.00551 1.21010 0.93481 1.00092 0.95750 0.91306 1.21668 0.99173 0.98872 0.95313 1.21448 0.90545 1.00072 1.01857 1.18710 0.95548 0.93636 0.88282 0.94324 1.21144 0.91057 1.31181 1.10295 0.92485 1.24959 0.98033 0.95044 0.96212 1.69954 1.35381 1.30236 1.17841 0.86640 0.86240 0.77222 0.78240 1.20855 1.20005 1.21507 1.22072 0.89781 0.82555 1.00370 0.94543 1.86741 1.76744 1.24272 1.47334 1.22326 0.98453 1.00470 0.96912 0.93184 0.93627 0.93289 0.94043 0.93182 0.93766 0.90851 0.93237 0.80874 0.93580 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.19 37.16 0.34 -1.72 16 2 C -0.08 -1.47 2.57 -90.62 -0.23 -1.71 16 3 H 0.07 1.24 7.68 -51.93 -0.40 0.84 16 4 C -0.11 -2.25 5.20 -26.73 -0.14 -2.39 16 5 C -0.10 -2.47 4.87 -26.73 -0.13 -2.60 16 6 C 0.06 1.44 1.82 -91.77 -0.17 1.28 16 7 H 0.04 1.07 8.13 -51.93 -0.42 0.65 16 8 C -0.50 -14.23 8.19 -34.44 -0.28 -14.52 16 9 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 10 C 0.06 1.66 5.22 -17.82 -0.09 1.56 16 11 N -0.89 -26.34 11.95 55.43 0.66 -25.68 16 12 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 C 0.11 2.35 3.16 -26.73 -0.08 2.26 16 17 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 18 O -0.55 -11.36 11.52 -35.23 -0.41 -11.77 16 19 C -0.14 -2.52 4.92 -26.73 -0.13 -2.65 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 1.12 7.68 -51.93 -0.40 0.72 16 26 H 0.07 1.99 6.68 -51.93 -0.35 1.65 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.35 5.34 9.08 45.56 0.41 5.75 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 239.85 15.07 3.61 3.61 Total: -1.00 -30.13 239.85 -6.14 -36.28 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.07 Total: 0.93 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -0.92 Total: -20.49 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.66 Total: -25.68 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.41 Total: -11.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.13 -6.14 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823617.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.152 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds