Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47331 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99839 * 2 1 3 5 5 C 1.53002 * 109.47209 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46930 * 59.99977 * 5 4 2 7 7 H 1.08991 * 109.47367 * 60.00367 * 6 5 4 8 8 C 1.50707 * 109.46870 * 180.02562 * 6 5 4 9 9 H 1.07998 * 119.99745 * 116.29046 * 8 6 5 10 10 C 1.37871 * 120.00092 * 296.28679 * 8 6 5 11 11 N 1.31519 * 119.99859 * 352.49104 * 10 8 6 12 12 Si 1.86795 * 120.00281 * 172.48602 * 10 8 6 13 13 H 1.48500 * 109.47477 * 265.09310 * 12 10 8 14 14 H 1.48500 * 109.47039 * 25.09005 * 12 10 8 15 15 H 1.48498 * 109.47362 * 145.09095 * 12 10 8 16 16 C 1.53001 * 109.47193 * 300.00033 * 6 5 4 17 17 H 1.09003 * 109.47050 * 180.02562 * 16 6 5 18 18 O 1.42904 * 109.47373 * 300.00184 * 16 6 5 19 19 C 1.52997 * 109.46889 * 60.00106 * 16 6 5 20 20 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47072 * 299.99957 * 1 2 3 22 22 H 1.08996 * 109.47437 * 60.00358 * 1 2 3 23 23 H 1.09003 * 109.47050 * 60.00018 * 4 2 1 24 24 H 1.08995 * 109.47265 * 300.00201 * 4 2 1 25 25 H 1.09004 * 109.47075 * 300.00068 * 5 4 2 26 26 H 1.09002 * 109.47392 * 180.02562 * 5 4 2 27 27 H 0.97006 * 120.00069 * 179.97438 * 11 10 8 28 28 H 0.96690 * 113.99863 * 180.02562 * 18 16 6 29 29 H 1.09002 * 109.47072 * 179.97438 * 19 16 6 30 30 H 1.09004 * 109.47209 * 60.00046 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7208 -1.2496 6 6 4.0804 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0001 8 6 5.5875 -1.4406 -0.0005 9 1 6.1271 -0.9211 0.7775 10 6 6.2773 -2.1028 -0.9937 11 7 5.6286 -2.8566 -1.8544 12 14 8.1331 -1.9294 -1.1170 13 1 8.4666 -0.8567 -2.0883 14 1 8.6873 -1.5802 0.2157 15 1 8.7208 -3.2134 -1.5765 16 6 3.5705 -0.7203 1.2489 17 1 3.9346 -1.2337 2.1389 18 8 4.0463 0.6271 1.2486 19 6 2.0405 -0.7209 1.2492 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.6765 -0.2075 -2.1392 24 1 1.6766 -1.7489 -1.2492 25 1 3.9329 0.3070 -1.2499 26 1 3.9333 -1.2342 -2.1399 27 1 6.1139 -3.3223 -2.5534 28 1 3.7613 1.1450 2.0137 29 1 1.6772 -0.2074 2.1394 30 1 1.6775 -1.7487 1.2494 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823617.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -101.807887 kcal Electronic energy + Delta-G solvation = -11882.424211 eV Core-core repulsion = 9868.479051 eV Total energy + Delta-G solvation = -2013.945160 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.04428 -36.12215 -35.22073 -32.37988 -30.53854 -28.31913 -25.38634 -23.23994 -21.74939 -20.39308 -18.39733 -17.58463 -16.68276 -15.65134 -15.43221 -15.15199 -14.55632 -14.02754 -13.66948 -13.32279 -13.16112 -12.86572 -12.66225 -12.49234 -12.29103 -11.94713 -11.74658 -11.59902 -11.28163 -10.95426 -10.49868 -10.39525 -10.19704 -8.10039 -6.16872 1.38053 1.39952 1.50142 2.44252 3.18501 3.75998 4.01638 4.09981 4.10954 4.54641 4.64644 4.68685 4.80443 4.91541 4.95443 5.02821 5.06214 5.14082 5.29147 5.36313 5.44271 5.58995 5.69476 5.71461 5.98891 6.09374 6.42560 6.92098 7.25082 7.49055 8.97792 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063737 B = 0.012733 C = 0.011451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.199493 B = 2198.499866 C = 2444.539114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.092 4.092 6 C 0.049 3.951 7 H 0.009 0.991 8 C -0.519 4.519 9 H 0.046 0.954 10 C 0.008 3.992 11 N -0.921 5.921 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.270 1.270 15 H -0.281 1.281 16 C 0.115 3.885 17 H 0.033 0.967 18 O -0.568 6.568 19 C -0.136 4.136 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.259 0.741 28 H 0.375 0.625 29 H 0.083 0.917 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 5.108 4.850 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.130 4.130 6 C 0.031 3.969 7 H 0.027 0.973 8 C -0.557 4.557 9 H 0.064 0.936 10 C -0.189 4.189 11 N -0.561 5.561 12 Si 0.775 3.225 13 H -0.205 1.205 14 H -0.194 1.194 15 H -0.207 1.207 16 C 0.056 3.944 17 H 0.051 0.949 18 O -0.373 6.373 19 C -0.173 4.173 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.221 0.779 29 H 0.101 0.899 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.919 4.788 4.144 10.139 hybrid contribution 1.012 -0.099 0.115 1.023 sum -6.907 4.689 4.259 9.372 Atomic orbital electron populations 1.21788 0.93664 1.01869 1.02215 1.20970 0.95985 0.99148 0.93841 0.91638 1.21602 0.95634 0.99436 0.97898 1.21236 0.93961 0.98076 0.99722 1.18660 0.94157 0.92909 0.91218 0.97342 1.21474 0.93043 1.31051 1.10155 0.93564 1.25720 1.02461 0.94794 0.95965 1.70071 1.36979 1.30816 1.18273 0.85676 0.81053 0.77395 0.78339 1.20520 1.19408 1.20692 1.21807 0.92390 0.82524 0.97651 0.94898 1.86658 1.77380 1.24088 1.49215 1.22245 0.95263 1.01140 0.98691 0.92851 0.91352 0.92343 0.92649 0.93616 0.95347 0.94611 0.93176 0.77875 0.89888 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.19 71.98 0.66 -2.70 16 2 C -0.08 -2.60 2.57 -10.80 -0.03 -2.62 16 3 H 0.07 2.17 7.68 -2.39 -0.02 2.15 16 4 C -0.11 -4.23 5.20 30.60 0.16 -4.07 16 5 C -0.09 -4.58 4.87 30.59 0.15 -4.43 16 6 C 0.05 2.55 1.82 -11.54 -0.02 2.53 16 7 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 8 C -0.52 -30.31 8.19 25.60 0.21 -30.10 16 9 H 0.05 2.73 7.66 -2.91 -0.02 2.70 16 10 C 0.01 0.49 5.22 84.65 0.44 0.93 16 11 N -0.92 -55.68 11.95 21.45 0.26 -55.42 16 12 Si 0.95 45.98 29.54 68.60 2.03 48.00 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 C 0.11 4.77 3.16 30.59 0.10 4.87 16 17 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 18 O -0.57 -22.73 11.52 -148.98 -1.72 -24.45 16 19 C -0.14 -4.40 4.92 30.59 0.15 -4.25 16 20 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.03 1.45 7.68 -2.38 -0.02 1.44 16 26 H 0.04 2.01 6.68 -2.39 -0.02 1.99 16 27 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 28 H 0.37 10.49 9.08 -74.06 -0.67 9.82 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -65.76 239.85 2.81 -62.95 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.43 Total: 8.77 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 1.82 Total: -39.85 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.26 Total: -55.42 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.72 Total: -24.45 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -65.76 2.81 -62.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823617.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.861 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds