Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46952 * 110.99889 * 2 1 4 4 C 1.53053 * 109.36110 * 176.81069 * 3 2 1 5 5 N 1.46951 * 109.36680 * 58.40279 * 4 3 2 6 6 C 1.46965 * 110.87844 * 300.67820 * 5 4 3 7 7 H 1.08997 * 109.49010 * 299.35118 * 6 5 4 8 8 C 1.53004 * 109.48698 * 179.28819 * 6 5 4 9 9 C 1.50699 * 109.47295 * 65.00082 * 8 6 5 10 10 H 1.07999 * 119.99921 * 359.97438 * 9 8 6 11 11 C 1.37871 * 119.99828 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00317 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99927 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47303 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47034 * 119.99818 * 13 11 9 16 16 H 1.48502 * 109.47244 * 239.99946 * 13 11 9 17 17 C 1.46957 * 111.00120 * 236.19734 * 2 1 3 18 18 H 1.08999 * 109.46692 * 56.05082 * 1 2 3 19 19 H 1.09002 * 109.46991 * 176.04459 * 1 2 3 20 20 H 1.09000 * 109.47202 * 296.04752 * 1 2 3 21 21 H 1.08997 * 109.49107 * 296.77848 * 3 2 1 22 22 H 1.08997 * 109.48784 * 56.84566 * 3 2 1 23 23 H 1.09007 * 109.48826 * 178.36931 * 4 3 2 24 24 H 1.08998 * 109.48940 * 298.41108 * 4 3 2 25 25 H 1.00902 * 111.00187 * 64.54653 * 5 4 3 26 26 H 1.08997 * 109.46697 * 185.00123 * 8 6 5 27 27 H 1.09005 * 109.47258 * 304.99904 * 8 6 5 28 28 H 0.96996 * 120.00190 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.48952 * 303.16128 * 17 2 1 30 30 H 1.09011 * 109.48484 * 63.21986 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5658 -1.0597 6 6 3.5234 -0.8062 -1.0597 7 1 3.8253 -1.3116 -0.1424 8 6 4.0770 -1.5654 -2.2672 9 6 5.5703 -1.7119 -2.1271 10 1 6.0742 -1.3039 -1.2634 11 6 6.2933 -2.3658 -3.1020 12 7 5.6799 -2.8614 -4.1545 13 14 8.1444 -2.5468 -2.9287 14 1 8.5882 -1.9067 -1.6643 15 1 8.5008 -3.9882 -2.9049 16 1 8.8159 -1.8898 -4.0788 17 6 1.9957 -0.7633 -1.1400 18 1 -0.3633 0.5739 -0.8525 19 1 -0.3633 -1.0252 -0.0709 20 1 -0.3633 0.4513 0.9233 21 1 1.6938 1.8773 -0.9173 22 1 1.6013 1.9128 0.8603 23 1 3.9179 2.3448 0.0513 24 1 3.8253 0.8482 1.0108 25 1 3.8466 1.0313 -1.9315 26 1 3.6182 -2.5529 -2.3170 27 1 3.8501 -1.0130 -3.1791 28 1 6.1885 -3.3218 -4.8402 29 1 1.6013 -1.7790 -1.1110 30 1 1.6938 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = -0.481424 kcal Electronic energy + Delta-G solvation = -11520.485807 eV Core-core repulsion = 9543.227243 eV Total energy + Delta-G solvation = -1977.258564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.80497 -34.37370 -32.76881 -31.12005 -27.25368 -27.02137 -23.54400 -22.98737 -20.68745 -19.76621 -16.18571 -15.46528 -14.70707 -14.54075 -14.41913 -14.28123 -13.82734 -12.89292 -12.24850 -11.96853 -11.83784 -11.56079 -11.24033 -10.99094 -10.74514 -10.54652 -10.35285 -10.08008 -9.23737 -9.02163 -8.27063 -8.20968 -7.55417 -5.88827 -3.86994 3.39817 3.46977 3.53498 4.15000 4.58038 4.90094 5.23936 5.32682 5.46834 5.49800 5.57561 5.65622 5.80606 5.85597 5.90739 5.96662 6.22257 6.36496 6.51661 6.93286 7.23215 7.29100 7.54263 7.69849 7.96906 8.09096 8.19070 8.57357 9.19984 9.75255 11.23281 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.072048 B = 0.009835 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.537785 B = 2846.338450 C = 3111.524852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.058 3.942 5 N -0.664 5.664 6 C 0.099 3.901 7 H 0.077 0.923 8 C 0.029 3.971 9 C -0.491 4.491 10 H 0.063 0.937 11 C 0.049 3.951 12 N -0.904 5.904 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.020 3.980 18 H 0.019 0.981 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.026 0.974 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.333 0.667 26 H 0.021 0.979 27 H 0.014 0.986 28 H 0.257 0.743 29 H 0.076 0.924 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 6.696 6.472 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.113 4.113 4 C -0.072 4.072 5 N -0.292 5.292 6 C -0.011 4.011 7 H 0.095 0.905 8 C -0.009 4.009 9 C -0.530 4.530 10 H 0.081 0.919 11 C -0.150 4.150 12 N -0.545 5.545 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.213 1.213 17 C -0.109 4.109 18 H 0.038 0.962 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.973 6.201 7.071 11.708 hybrid contribution -0.386 0.424 -1.098 1.239 sum -7.359 6.625 5.973 11.564 Atomic orbital electron populations 1.22359 0.88270 1.01618 1.00062 1.62158 1.06959 1.13522 1.44002 1.22909 0.98965 0.89453 0.99970 1.22112 0.90000 0.98400 0.96716 1.60670 1.61040 1.02864 1.04652 1.21863 0.87591 0.89266 1.02401 0.90479 1.19156 0.96463 0.94457 0.90836 1.21205 0.92076 1.33662 1.06031 0.91852 1.25031 0.98355 0.96107 0.95539 1.69978 1.35402 1.38869 1.10254 0.86523 0.86019 0.77414 0.77951 1.19705 1.21368 1.21321 1.23083 0.99678 0.98072 0.90064 0.96210 0.91552 0.91867 0.95536 0.91174 0.91116 0.90600 0.84956 0.96039 0.96771 0.93352 0.90601 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.63 60.07 0.58 0.91 16 2 N -0.54 -8.65 4.97 -242.76 -1.21 -9.85 16 3 C 0.02 0.25 5.61 -3.77 -0.02 0.23 16 4 C 0.06 0.92 6.72 -3.77 -0.03 0.89 16 5 N -0.66 -12.98 6.28 -106.59 -0.67 -13.65 16 6 C 0.10 2.08 2.53 -67.65 -0.17 1.91 16 7 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 8 C 0.03 0.73 4.58 -27.88 -0.13 0.61 16 9 C -0.49 -13.99 8.84 -34.44 -0.30 -14.29 16 10 H 0.06 1.82 7.74 -52.49 -0.41 1.41 16 11 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 12 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 13 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.02 0.37 4.89 -3.77 -0.02 0.35 16 18 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 19 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.33 6.38 8.80 -39.29 -0.35 6.03 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 30 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 246.08 15.07 3.71 3.71 Total: -1.00 -30.18 246.08 -7.59 -37.77 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.95 Total: -0.45 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.19 Total: -8.06 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -1.14 Total: -50.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.18 -7.59 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.291 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds