Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53048 * 109.48842 * 120.05809 * 2 1 3 5 5 H 1.09009 * 109.49138 * 181.53103 * 4 2 1 6 6 C 1.50699 * 109.49151 * 301.60077 * 4 2 1 7 7 H 1.07997 * 120.00079 * 359.97438 * 6 4 2 8 8 C 1.37878 * 119.99876 * 179.97438 * 6 4 2 9 9 N 1.31517 * 120.00133 * 0.02562 * 8 6 4 10 10 Si 1.86799 * 119.99976 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47329 * 119.99986 * 10 8 6 13 13 H 1.48501 * 109.47364 * 240.00192 * 10 8 6 14 14 N 1.46964 * 109.36389 * 61.57206 * 4 2 1 15 15 C 1.46956 * 110.88216 * 59.31475 * 14 4 2 16 16 C 1.53052 * 109.36679 * 300.68569 * 15 14 4 17 17 N 1.46951 * 109.49114 * 239.95116 * 2 1 3 18 18 C 1.46906 * 111.00125 * 63.22296 * 17 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 22 22 H 0.96999 * 119.99685 * 180.02562 * 9 8 6 23 23 H 1.00900 * 111.00074 * 183.18772 * 14 4 2 24 24 H 1.08993 * 109.48730 * 180.71267 * 15 14 4 25 25 H 1.09004 * 109.48518 * 60.64822 * 15 14 4 26 26 H 1.09004 * 109.48522 * 298.43743 * 16 15 14 27 27 H 1.08997 * 109.49053 * 178.36917 * 16 15 14 28 28 H 1.09003 * 109.46635 * 59.99611 * 18 17 2 29 29 H 1.08996 * 109.47277 * 180.02562 * 18 17 2 30 30 H 1.08995 * 109.46502 * 300.00105 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7227 1.2488 5 1 3.1303 -0.6990 1.2627 6 6 1.5066 -0.0372 2.4800 7 1 0.8673 0.8277 2.3822 8 6 1.8342 -0.5143 3.7315 9 7 2.6132 -1.5673 3.8506 10 14 1.1717 0.3348 5.2577 11 1 0.3258 1.4871 4.8552 12 1 0.3581 -0.6260 6.0451 13 1 2.3051 0.8190 6.0862 14 7 1.5809 -2.1184 1.2262 15 6 2.0712 -2.8120 0.0270 16 6 1.5606 -2.0893 -1.2217 17 7 2.0203 -0.6937 -1.1991 18 6 1.6135 0.0144 -2.4203 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5131 -0.8904 21 1 -0.3634 0.5146 0.8896 22 1 2.8433 -1.9031 4.7310 23 1 1.8603 -2.6047 2.0649 24 1 1.7073 -3.8394 0.0269 25 1 3.1612 -2.8120 0.0271 26 1 0.4709 -2.1130 -1.2356 27 1 1.9468 -2.5850 -2.1123 28 1 2.0236 1.0243 -2.4083 29 1 1.9890 -0.5204 -3.2926 30 1 0.5257 0.0646 -2.4658 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = -13.299292 kcal Electronic energy + Delta-G solvation = -12032.454711 eV Core-core repulsion = 10054.640323 eV Total energy + Delta-G solvation = -1977.814388 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24063 -35.79590 -34.06802 -32.57887 -29.03677 -27.79476 -26.53282 -23.61665 -23.29812 -19.43709 -18.51839 -17.24850 -16.61070 -15.87280 -15.39321 -15.22268 -15.01525 -14.51714 -14.09998 -13.40180 -13.12995 -12.85208 -12.71968 -12.57945 -12.38136 -12.10258 -12.05557 -11.79117 -11.00566 -10.93389 -10.62951 -9.13705 -8.74824 -8.15717 -6.25414 1.42437 1.44489 1.55877 2.43361 3.11084 3.20768 4.00958 4.20412 4.25964 4.41716 4.49231 4.59666 4.69785 4.71843 4.76768 4.95828 5.01571 5.08131 5.17013 5.29110 5.44181 5.57496 5.79330 6.05954 6.33714 6.36749 6.65412 6.98542 7.11480 7.45764 8.94446 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.060716 B = 0.013700 C = 0.012082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.048972 B = 2043.311619 C = 2316.948583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.094 3.906 3 H 0.060 0.940 4 C 0.226 3.774 5 H -0.048 1.048 6 C -0.519 4.519 7 H 0.062 0.938 8 C 0.018 3.982 9 N -0.927 5.927 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.283 1.283 14 N -0.687 5.687 15 C 0.051 3.949 16 C 0.064 3.936 17 N -0.560 5.560 18 C 0.025 3.975 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.264 0.736 23 H 0.347 0.653 24 H 0.078 0.922 25 H 0.003 0.997 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 0.624 -8.271 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 H 0.078 0.922 4 C 0.117 3.883 5 H -0.030 1.030 6 C -0.558 4.558 7 H 0.080 0.920 8 C -0.181 4.181 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.209 1.209 14 N -0.322 5.322 15 C -0.080 4.080 16 C -0.064 4.064 17 N -0.284 5.284 18 C -0.123 4.123 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.168 0.832 24 H 0.096 0.904 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.231 0.668 -8.423 9.046 hybrid contribution 0.126 0.109 1.278 1.289 sum -3.104 0.776 -7.145 7.829 Atomic orbital electron populations 1.22025 0.96452 1.01644 1.00478 1.21637 0.93964 0.96341 0.89513 0.92159 1.18903 0.90519 0.86703 0.92148 1.03020 1.21487 1.30267 1.12876 0.91136 0.92003 1.25771 0.94666 0.95619 1.02046 1.69816 1.37389 1.25172 1.24415 0.85431 0.78042 0.78546 0.79085 1.19063 1.20673 1.20875 1.60965 1.62305 1.04293 1.04646 1.22028 0.95908 0.97750 0.92274 1.22121 0.98054 0.88680 0.97522 1.62383 1.60106 1.02954 1.02970 1.22405 0.98790 0.99275 0.91808 0.92814 0.92717 0.93138 0.92670 0.83220 0.90360 0.97919 0.94217 0.89157 0.91516 0.90134 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 8.09 71.98 0.58 -5.25 16 2 C 0.09 4.10 2.48 44.92 0.11 4.21 16 3 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.23 11.87 2.25 44.17 0.10 11.97 16 5 H -0.05 -2.91 8.14 -2.38 -0.02 -2.93 16 6 C -0.52 -28.74 8.03 25.60 0.21 -28.53 16 7 H 0.06 3.35 6.60 -2.91 -0.02 3.33 16 8 C 0.02 0.97 5.34 84.65 0.45 1.42 16 9 N -0.93 -53.35 11.50 21.45 0.25 -53.10 16 10 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 N -0.69 -34.12 5.85 -494.99 -2.89 -37.01 16 15 C 0.05 2.09 6.72 86.31 0.58 2.67 16 16 C 0.06 2.26 5.24 86.31 0.45 2.72 16 17 N -0.56 -21.12 4.92 -896.56 -4.41 -25.53 16 18 C 0.02 0.71 9.28 127.69 1.19 1.90 16 19 H 0.05 2.21 5.94 -2.39 -0.01 2.20 16 20 H 0.05 1.81 6.48 -2.39 -0.02 1.80 16 21 H 0.05 2.13 6.53 -2.38 -0.02 2.11 16 22 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.35 18.88 6.72 -89.69 -0.60 18.28 16 24 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.04 1.39 6.35 -2.39 -0.02 1.38 16 27 H 0.09 2.62 8.13 -2.39 -0.02 2.60 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 30 H 0.03 0.86 6.39 -2.39 -0.02 0.84 16 Total: -1.00 -60.22 230.85 -0.84 -61.07 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.52 Total: 17.68 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 3.67 Total: -8.89 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -7.06 Total: -115.64 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.22 -0.84 -61.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.766 kcal (2) G-P(sol) polarization free energy of solvation -60.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds