Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.49283 * 2 1 4 4 C 1.53059 * 109.48888 * 239.93331 * 2 1 3 5 5 H 1.09003 * 109.48841 * 178.46819 * 4 2 1 6 6 C 1.50699 * 109.48368 * 58.40485 * 4 2 1 7 7 H 1.08001 * 120.00183 * 0.10689 * 6 4 2 8 8 C 1.37881 * 119.99704 * 180.10554 * 6 4 2 9 9 N 1.31514 * 119.99951 * 179.97438 * 8 6 4 10 10 Si 1.86797 * 120.00189 * 0.02562 * 8 6 4 11 11 H 1.48498 * 109.47346 * 89.99494 * 10 8 6 12 12 H 1.48496 * 109.47143 * 209.99935 * 10 8 6 13 13 H 1.48508 * 109.47090 * 329.99783 * 10 8 6 14 14 N 1.46955 * 109.36563 * 298.43901 * 4 2 1 15 15 C 1.46955 * 110.87898 * 300.67816 * 14 4 2 16 16 C 1.53049 * 109.36716 * 59.32097 * 15 14 4 17 17 N 1.46955 * 109.36348 * 301.59809 * 16 15 14 18 18 C 1.46906 * 111.00028 * 183.18399 * 17 16 15 19 19 H 1.09003 * 109.47145 * 299.95657 * 1 2 3 20 20 H 1.09009 * 109.47026 * 59.95349 * 1 2 3 21 21 H 1.09002 * 109.47607 * 179.97438 * 1 2 3 22 22 H 0.96998 * 120.00260 * 180.02562 * 9 8 6 23 23 H 1.00901 * 110.99738 * 176.81237 * 14 4 2 24 24 H 1.09002 * 109.48761 * 179.29190 * 15 14 4 25 25 H 1.09003 * 109.48683 * 299.33164 * 15 14 4 26 26 H 1.08994 * 109.48827 * 61.56422 * 16 15 14 27 27 H 1.09001 * 109.49220 * 181.61351 * 16 15 14 28 28 H 1.09003 * 109.46759 * 63.95716 * 18 17 16 29 29 H 1.08999 * 109.47304 * 183.95582 * 18 17 16 30 30 H 1.08999 * 109.47382 * 303.96031 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7229 -1.2487 5 1 3.1303 -0.6992 -1.2626 6 6 1.5066 -0.0374 -2.4800 7 1 0.8684 0.8283 -2.3822 8 6 1.8328 -0.5156 -3.7314 9 7 1.3665 0.0823 -4.8060 10 14 2.9361 -2.0134 -3.9006 11 1 2.1027 -3.2423 -3.9209 12 1 3.7091 -1.9185 -5.1649 13 1 3.8736 -2.0701 -2.7502 14 7 1.5807 -2.1185 -1.2262 15 6 2.0710 -2.8121 -0.0269 16 6 1.5604 -2.0893 1.2218 17 7 2.0202 -0.6937 1.1992 18 6 1.6133 0.0145 2.4203 19 1 -0.3633 0.5132 0.8904 20 1 -0.3633 0.5146 -0.8896 21 1 -0.3634 -1.0276 -0.0005 22 1 1.5956 -0.2543 -5.6863 23 1 1.8602 -2.6049 -2.0649 24 1 1.7070 -3.8396 -0.0268 25 1 3.1610 -2.8125 -0.0271 26 1 0.4708 -2.1130 1.2356 27 1 1.9463 -2.5852 2.1124 28 1 2.1015 -0.4389 3.2830 29 1 1.9048 1.0622 2.3469 30 1 0.5318 -0.0545 2.5370 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837505.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = -5.827072 kcal Electronic energy + Delta-G solvation = -12103.752996 eV Core-core repulsion = 10126.262628 eV Total energy + Delta-G solvation = -1977.490368 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44675 -35.94335 -34.42146 -32.82308 -29.42109 -27.94894 -26.49738 -23.87917 -23.15689 -19.53706 -18.84815 -17.99919 -16.47344 -15.96137 -15.51865 -15.47439 -15.05160 -14.80800 -14.51703 -13.62102 -13.11406 -12.94904 -12.85221 -12.68525 -12.38842 -12.24243 -11.90677 -11.77107 -11.15422 -11.08981 -10.80795 -9.32036 -9.04019 -8.32181 -6.36567 1.22786 1.28890 1.35556 2.25273 2.93862 3.12278 3.62149 4.05586 4.18836 4.30657 4.39423 4.50270 4.62708 4.64764 4.74960 4.87985 4.94498 5.02037 5.11681 5.13208 5.18655 5.46095 5.56206 6.12474 6.19551 6.29660 6.42559 6.50162 6.74889 7.28492 8.83980 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054773 B = 0.016194 C = 0.013711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.078900 B = 1728.583200 C = 2041.719370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 H 0.065 0.935 4 C 0.193 3.807 5 H -0.015 1.015 6 C -0.504 4.504 7 H 0.048 0.952 8 C 0.019 3.981 9 N -0.941 5.941 10 Si 0.936 3.064 11 H -0.255 1.255 12 H -0.290 1.290 13 H -0.263 1.263 14 N -0.691 5.691 15 C 0.044 3.956 16 C 0.061 3.939 17 N -0.556 5.556 18 C 0.026 3.974 19 H 0.056 0.944 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.267 0.733 23 H 0.314 0.686 24 H 0.092 0.908 25 H 0.022 0.978 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -5.266 12.423 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 H 0.084 0.916 4 C 0.085 3.915 5 H 0.003 0.997 6 C -0.543 4.543 7 H 0.066 0.934 8 C -0.179 4.179 9 N -0.582 5.582 10 Si 0.763 3.237 11 H -0.180 1.180 12 H -0.217 1.217 13 H -0.189 1.189 14 N -0.328 5.328 15 C -0.086 4.086 16 C -0.067 4.067 17 N -0.281 5.281 18 C -0.122 4.122 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.136 0.864 24 H 0.110 0.890 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.245 -5.117 12.518 13.581 hybrid contribution 0.427 -0.428 -1.015 1.181 sum 1.672 -5.545 11.503 12.879 Atomic orbital electron populations 1.22042 0.96613 1.01813 1.00340 1.21461 0.93832 0.96466 0.88886 0.91632 1.19422 0.92281 0.86092 0.93720 0.99711 1.21226 1.30127 1.12958 0.89979 0.93426 1.25776 0.97026 0.99551 0.95559 1.70013 1.46897 1.42689 0.98557 0.85992 0.79469 0.80818 0.77434 1.18015 1.21672 1.18853 1.61196 1.63997 1.03880 1.03712 1.22194 0.97108 0.98259 0.90997 1.22160 0.98427 0.88548 0.97573 1.62420 1.59868 1.03019 1.02755 1.22394 0.98862 0.99183 0.91736 0.92524 0.94004 0.92387 0.92396 0.86448 0.88971 0.96002 0.93969 0.88256 0.89774 0.91594 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.09 71.98 0.58 -5.31 16 2 C 0.10 4.23 2.47 44.92 0.11 4.34 16 3 H 0.07 2.79 8.09 -2.39 -0.02 2.77 16 4 C 0.19 9.38 1.76 44.18 0.08 9.46 16 5 H -0.01 -0.76 7.21 -2.39 -0.02 -0.77 16 6 C -0.50 -28.94 8.61 25.60 0.22 -28.72 16 7 H 0.05 2.98 6.85 -2.91 -0.02 2.96 16 8 C 0.02 1.13 5.47 84.66 0.46 1.59 16 9 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 10 Si 0.94 44.69 24.65 68.60 1.69 46.38 16 11 H -0.25 -11.34 6.96 99.48 0.69 -10.65 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 14 N -0.69 -30.61 5.80 -494.99 -2.87 -33.48 16 15 C 0.04 1.53 6.72 86.31 0.58 2.11 16 16 C 0.06 1.87 5.24 86.31 0.45 2.32 16 17 N -0.56 -18.98 4.92 -896.53 -4.41 -23.39 16 18 C 0.03 0.67 9.09 127.69 1.16 1.83 16 19 H 0.06 1.87 6.65 -2.39 -0.02 1.85 16 20 H 0.04 1.88 6.53 -2.38 -0.02 1.86 16 21 H 0.06 2.32 5.94 -2.39 -0.01 2.30 16 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.31 14.33 3.99 -89.69 -0.36 13.97 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.04 1.31 6.34 -2.39 -0.02 1.30 16 27 H 0.10 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.67 8.07 -2.39 -0.02 1.66 16 30 H 0.03 0.78 6.80 -2.39 -0.02 0.76 16 Total: -1.00 -64.36 224.74 -0.95 -65.31 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.69 Total: 15.85 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 3.65 Total: -12.37 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -6.98 Total: -115.17 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.69 Total: 46.38 kcal Total: -64.36 -0.95 -65.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837505.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds