Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47091 * 2 1 4 4 C 1.53004 * 109.47138 * 240.00114 * 2 1 3 5 5 C 1.52999 * 109.47138 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47245 * 59.99651 * 5 4 2 7 7 H 1.09001 * 109.47336 * 179.97438 * 6 5 4 8 8 O 1.42904 * 109.46927 * 60.00218 * 6 5 4 9 9 C 1.53004 * 109.47337 * 300.00227 * 6 5 4 10 10 H 1.08998 * 109.46479 * 300.00079 * 9 6 5 11 11 C 1.50698 * 109.46891 * 179.97438 * 9 6 5 12 12 H 1.08005 * 119.99919 * 275.14426 * 11 9 6 13 13 C 1.37878 * 120.00176 * 95.15558 * 11 9 6 14 14 N 1.31519 * 119.99768 * 185.90751 * 13 11 9 15 15 Si 1.86794 * 119.99882 * 5.90515 * 13 11 9 16 16 H 1.48498 * 109.47119 * 84.77904 * 15 13 11 17 17 H 1.48503 * 109.47153 * 204.77926 * 15 13 11 18 18 H 1.48500 * 109.47339 * 324.77696 * 15 13 11 19 19 C 1.52999 * 109.47138 * 59.99707 * 9 6 5 20 20 H 1.09000 * 109.46764 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47286 * 300.00110 * 1 2 3 22 22 H 1.08998 * 109.47310 * 60.00027 * 1 2 3 23 23 H 1.09000 * 109.46980 * 299.99485 * 4 2 1 24 24 H 1.08998 * 109.47135 * 59.99752 * 4 2 1 25 25 H 1.09002 * 109.47286 * 179.97438 * 5 4 2 26 26 H 1.08998 * 109.47277 * 300.00182 * 5 4 2 27 27 H 0.96695 * 114.00062 * 59.99933 * 8 6 5 28 28 H 0.96998 * 119.99406 * 179.97438 * 14 13 11 29 29 H 1.08993 * 109.47125 * 180.02562 * 19 9 6 30 30 H 1.09006 * 109.47091 * 60.00114 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0003 7 1 5.1706 -1.4415 -0.0008 8 8 3.6047 -2.7890 0.0000 9 6 3.5705 -0.7203 1.2489 10 1 3.9335 0.3075 1.2486 11 6 4.0730 -1.4307 2.4793 12 1 3.5319 -2.2791 2.8718 13 6 5.2232 -0.9975 3.1042 14 7 5.7258 -1.6850 4.1064 15 14 6.0676 0.5655 2.5271 16 1 5.4351 1.7398 3.1800 17 1 7.5068 0.5133 2.8893 18 1 5.9322 0.6861 1.0532 19 6 2.0406 -0.7208 1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6767 -1.7489 -1.2492 24 1 1.6766 -0.2074 -2.1392 25 1 3.9334 -1.2349 -2.1394 26 1 3.9330 0.3071 -1.2498 27 1 3.8901 -3.3070 -0.7650 28 1 6.5352 -1.3804 4.5457 29 1 1.6772 -0.2066 2.1390 30 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -102.158412 kcal Electronic energy + Delta-G solvation = -11933.097063 eV Core-core repulsion = 9919.136703 eV Total energy + Delta-G solvation = -2013.960360 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11865 -36.29970 -34.96009 -32.34489 -31.77591 -27.12040 -26.44574 -22.92009 -21.72536 -20.49054 -18.82629 -17.53384 -16.67531 -15.97306 -15.54131 -15.02449 -14.44977 -14.36352 -13.93788 -13.74321 -12.97026 -12.81729 -12.81274 -12.45246 -12.28398 -12.02164 -11.70322 -11.50476 -11.22394 -11.10924 -10.78737 -10.52367 -10.24782 -8.25681 -6.26939 1.32448 1.34413 1.44723 2.35245 3.07984 3.69821 3.96994 4.06156 4.12467 4.35773 4.54783 4.62449 4.72406 4.83325 4.89966 4.96292 5.04738 5.09108 5.14358 5.29487 5.35759 5.42566 5.55385 5.73083 5.74907 5.76890 6.39725 6.77451 7.22372 7.36797 8.92731 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.045464 B = 0.014880 C = 0.014391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.724712 B = 1881.212822 C = 1945.181800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.099 4.099 5 C -0.149 4.149 6 C 0.110 3.890 7 H 0.021 0.979 8 O -0.568 6.568 9 C 0.014 3.986 10 H 0.043 0.957 11 C -0.498 4.498 12 H 0.019 0.981 13 C 0.000 4.000 14 N -0.957 5.957 15 Si 0.944 3.056 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.241 1.241 19 C -0.088 4.088 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.373 0.627 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 5.388 -13.159 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.085 0.915 4 C -0.136 4.136 5 C -0.187 4.187 6 C 0.051 3.949 7 H 0.039 0.961 8 O -0.373 6.373 9 C -0.005 4.005 10 H 0.061 0.939 11 C -0.536 4.536 12 H 0.037 0.963 13 C -0.195 4.195 14 N -0.598 5.598 15 Si 0.767 3.233 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.165 1.165 19 C -0.126 4.126 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.220 0.780 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.974 5.581 -12.470 14.911 hybrid contribution 1.038 -0.041 0.130 1.046 sum -4.936 5.540 -12.340 14.399 Atomic orbital electron populations 1.21763 0.94144 1.01640 1.02026 1.21236 0.96368 0.99060 0.94776 0.91495 1.21421 0.94210 1.00726 0.97240 1.22292 0.97574 1.01240 0.97556 1.22014 0.94918 0.82337 0.95672 0.96091 1.86630 1.77099 1.24180 1.49423 1.19211 0.94574 0.94597 0.92124 0.93882 1.21197 1.08505 1.13611 1.10270 0.96293 1.26065 0.97618 1.00712 0.95152 1.70099 1.22796 1.41226 1.25706 0.85797 0.77254 0.79753 0.80505 1.18902 1.21459 1.16471 1.21407 0.95491 0.99038 0.96683 0.93236 0.93016 0.90940 0.92275 0.90114 0.90199 0.91280 0.78003 0.92788 0.94392 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.19 71.98 0.66 -2.88 16 2 C -0.10 -3.00 2.72 -10.79 -0.03 -3.03 16 3 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 4 C -0.10 -2.75 5.06 30.60 0.15 -2.59 16 5 C -0.15 -4.50 5.64 30.59 0.17 -4.33 16 6 C 0.11 4.53 3.20 30.60 0.10 4.62 16 7 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 8 O -0.57 -23.60 11.59 -148.98 -1.73 -25.33 16 9 C 0.01 0.65 1.62 -11.54 -0.02 0.63 16 10 H 0.04 1.99 5.25 -2.39 -0.01 1.98 16 11 C -0.50 -29.87 8.50 25.60 0.22 -29.65 16 12 H 0.02 1.29 8.06 -2.91 -0.02 1.27 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 14 N -0.96 -62.29 13.96 21.45 0.30 -61.99 16 15 Si 0.94 44.83 27.02 68.60 1.85 46.68 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 18 H -0.24 -10.34 6.78 99.48 0.67 -9.66 16 19 C -0.09 -3.71 4.32 30.59 0.13 -3.58 16 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.73 7.68 -2.39 -0.02 1.72 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.37 11.29 9.08 -74.06 -0.67 10.61 16 28 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.79 7.68 -2.38 -0.02 1.78 16 Total: -1.00 -70.68 238.62 2.67 -68.00 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.40 Total: 12.99 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 1.85 Total: -40.36 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.30 Total: -61.99 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.73 Total: -25.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.85 Total: 46.68 kcal Total: -70.68 2.67 -68.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.157 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds