Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47672 * 2 1 4 4 C 1.53004 * 109.47111 * 239.99444 * 2 1 3 5 5 C 1.52992 * 109.47105 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.47054 * 60.00723 * 5 4 2 7 7 H 1.08994 * 109.47023 * 59.99433 * 6 5 4 8 8 O 1.42899 * 109.46961 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.46510 * 299.99722 * 6 5 4 10 10 H 1.09005 * 109.46831 * 180.02562 * 9 6 5 11 11 C 1.50702 * 109.47364 * 299.99481 * 9 6 5 12 12 H 1.08001 * 119.99547 * 55.19600 * 11 9 6 13 13 C 1.37878 * 120.00449 * 235.19311 * 11 9 6 14 14 N 1.31510 * 119.99865 * 5.74061 * 13 11 9 15 15 Si 1.86799 * 120.00040 * 185.74163 * 13 11 9 16 16 H 1.48497 * 109.47091 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46946 * 119.99856 * 15 13 11 18 18 H 1.48491 * 109.47139 * 240.00209 * 15 13 11 19 19 C 1.52992 * 109.47609 * 59.99991 * 9 6 5 20 20 H 1.09001 * 109.47012 * 300.00310 * 1 2 3 21 21 H 1.08997 * 109.46821 * 59.99863 * 1 2 3 22 22 H 1.08991 * 109.47178 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47307 * 300.00779 * 4 2 1 24 24 H 1.09000 * 109.46461 * 60.00168 * 4 2 1 25 25 H 1.08994 * 109.47669 * 300.00551 * 5 4 2 26 26 H 1.09001 * 109.47007 * 180.02562 * 5 4 2 27 27 H 0.96701 * 114.00208 * 299.99593 * 8 6 5 28 28 H 0.97003 * 120.00330 * 179.97438 * 14 13 11 29 29 H 1.09003 * 109.46996 * 59.99814 * 19 9 6 30 30 H 1.09001 * 109.47371 * 179.97438 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4436 0.0004 7 1 3.7156 -2.4711 0.0002 8 8 5.5084 -1.4447 0.0004 9 6 3.5694 -0.7223 1.2495 10 1 3.9327 -1.2362 2.1396 11 6 4.0724 0.6983 1.2499 12 1 3.8775 1.3403 0.4035 13 6 4.7813 1.1785 2.3306 14 7 5.1163 0.3674 3.3101 15 14 5.2660 2.9810 2.4035 16 1 4.7734 3.6755 1.1868 17 1 4.6651 3.6068 3.6087 18 1 6.7450 3.0935 2.4724 19 6 2.0395 -0.7216 1.2492 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6766 -1.7490 -1.2492 24 1 1.6767 -0.2075 -2.1392 25 1 3.9337 0.3055 -1.2486 26 1 3.9333 -1.2355 -2.1391 27 1 5.9014 -1.8867 -0.7646 28 1 5.6153 0.7050 4.0703 29 1 1.6757 -1.7491 1.2491 30 1 1.6762 -0.2081 2.1394 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = -99.674135 kcal Electronic energy + Delta-G solvation = -11953.928085 eV Core-core repulsion = 9940.075452 eV Total energy + Delta-G solvation = -2013.852634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.97949 -36.62927 -34.71131 -31.97140 -31.35405 -26.91069 -26.34843 -23.20361 -21.71982 -20.67806 -17.90936 -17.62196 -16.64613 -16.08954 -15.09980 -14.84640 -14.76098 -13.87881 -13.65915 -13.48280 -13.18360 -12.86446 -12.76504 -12.44550 -12.19930 -11.94647 -11.75696 -11.50196 -11.09476 -10.83177 -10.58528 -10.33912 -10.17211 -8.03632 -6.06871 1.38439 1.39680 1.50668 2.46887 3.27259 3.76732 4.05934 4.08747 4.38774 4.48272 4.50764 4.70399 4.83450 4.94951 5.00185 5.01480 5.11957 5.15282 5.32007 5.36360 5.52810 5.63117 5.71293 5.80725 5.85457 5.94209 6.45700 7.04272 7.35616 7.55807 9.07541 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.016634 C = 0.013944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.748657 B = 1682.879055 C = 2007.581658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.052 0.948 4 C -0.098 4.098 5 C -0.136 4.136 6 C 0.113 3.887 7 H 0.034 0.966 8 O -0.577 6.577 9 C 0.019 3.981 10 H 0.021 0.979 11 C -0.483 4.483 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.936 5.936 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.288 1.288 19 C -0.089 4.089 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.370 0.630 28 H 0.255 0.745 29 H 0.046 0.954 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -2.071 -9.051 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.071 0.929 4 C -0.136 4.136 5 C -0.174 4.174 6 C 0.055 3.945 7 H 0.051 0.949 8 O -0.381 6.381 9 C 0.000 4.000 10 H 0.039 0.961 11 C -0.521 4.521 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.578 5.578 15 Si 0.773 3.227 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.214 1.214 19 C -0.127 4.127 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.607 -1.734 -8.326 10.769 hybrid contribution 0.779 0.584 0.124 0.982 sum -5.827 -1.150 -8.202 10.126 Atomic orbital electron populations 1.21781 0.94211 1.01950 1.01567 1.21052 0.95630 0.99384 0.94606 0.92920 1.21438 0.93953 1.00723 0.97447 1.22097 0.97171 1.01119 0.97028 1.21946 0.79684 0.95837 0.97037 0.94858 1.86787 1.21224 1.81418 1.48721 1.18965 0.92209 0.95484 0.93341 0.96055 1.21239 1.32110 0.97101 1.01675 0.92816 1.25741 0.96192 1.01118 0.96276 1.70086 1.41290 1.35938 1.10463 0.85685 0.77501 0.81423 0.78111 1.18750 1.20750 1.21449 1.21485 0.96034 0.98007 0.97142 0.93522 0.91621 0.92074 0.91346 0.90668 0.93119 0.91061 0.78395 0.93644 0.93544 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.19 71.98 0.66 -3.17 16 2 C -0.09 -3.14 2.49 -10.79 -0.03 -3.17 16 3 H 0.05 2.15 6.72 -2.39 -0.02 2.13 16 4 C -0.10 -3.02 5.20 30.59 0.16 -2.86 16 5 C -0.14 -4.87 5.31 30.59 0.16 -4.71 16 6 C 0.11 4.90 3.15 30.60 0.10 5.00 16 7 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 8 O -0.58 -26.57 12.94 -148.98 -1.93 -28.50 16 9 C 0.02 0.97 2.66 -11.54 -0.03 0.94 16 10 H 0.02 1.29 6.92 -2.38 -0.02 1.27 16 11 C -0.48 -27.14 6.57 25.60 0.17 -26.97 16 12 H 0.05 2.97 5.71 -2.91 -0.02 2.95 16 13 C 0.00 0.17 5.45 84.66 0.46 0.64 16 14 N -0.94 -58.93 12.62 21.45 0.27 -58.66 16 15 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 16 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 19 C -0.09 -3.80 4.72 30.59 0.14 -3.66 16 20 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 25 H 0.05 2.08 6.53 -2.39 -0.02 2.06 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.37 12.29 9.08 -74.06 -0.67 11.62 16 28 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.82 237.73 2.60 -65.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.44 Total: 11.65 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 1.80 Total: -37.95 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.27 Total: -58.66 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.93 Total: -28.50 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -67.82 2.60 -65.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.453 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds