Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47923 * 2 1 4 4 C 1.53006 * 109.46948 * 239.99727 * 2 1 3 5 5 C 1.52999 * 109.46951 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47305 * 59.99925 * 5 4 2 7 7 H 1.08993 * 109.46914 * 60.00043 * 6 5 4 8 8 O 1.42898 * 109.47074 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47109 * 300.00054 * 6 5 4 10 10 H 1.09001 * 109.47075 * 300.00075 * 9 6 5 11 11 C 1.50697 * 109.47049 * 179.97438 * 9 6 5 12 12 H 1.07997 * 120.00209 * 324.87423 * 11 9 6 13 13 C 1.37884 * 119.99952 * 144.86961 * 11 9 6 14 14 N 1.31514 * 119.99922 * 5.18872 * 13 11 9 15 15 Si 1.86799 * 120.00007 * 185.18103 * 13 11 9 16 16 H 1.48497 * 109.47031 * 60.00288 * 15 13 11 17 17 H 1.48498 * 109.46972 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47019 * 300.00320 * 15 13 11 19 19 C 1.52999 * 109.47081 * 59.99809 * 9 6 5 20 20 H 1.08993 * 109.47426 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46666 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46650 * 60.00218 * 1 2 3 23 23 H 1.09000 * 109.47401 * 60.00514 * 4 2 1 24 24 H 1.09001 * 109.47137 * 300.00090 * 4 2 1 25 25 H 1.09005 * 109.46979 * 179.97438 * 5 4 2 26 26 H 1.09005 * 109.47446 * 299.99801 * 5 4 2 27 27 H 0.96705 * 113.99761 * 300.00032 * 8 6 5 28 28 H 0.96998 * 120.00136 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.46949 * 60.00189 * 19 9 6 30 30 H 1.09005 * 109.46979 * 180.02562 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 1 3.7158 -2.4709 0.0002 8 8 5.5085 -1.4434 0.0009 9 6 3.5695 -0.7222 1.2496 10 1 3.9332 0.3054 1.2497 11 6 4.0709 -1.4332 2.4800 12 1 4.1713 -2.5085 2.4791 13 6 4.4014 -0.7109 3.6071 14 7 4.1836 0.5855 3.6446 15 14 5.1584 -1.5739 5.0807 16 1 6.4363 -2.2136 4.6771 17 1 5.4184 -0.5824 6.1552 18 1 4.2218 -2.6117 5.5815 19 6 2.0395 -0.7216 1.2492 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.6767 -0.2075 -2.1393 24 1 1.6766 -1.7490 -1.2492 25 1 3.9333 -1.2362 -2.1387 26 1 3.9337 0.3056 -1.2488 27 1 5.9021 -1.8850 -0.7641 28 1 4.4164 1.0937 4.4373 29 1 1.6759 -1.7492 1.2491 30 1 1.6762 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259891286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -83.464010 kcal Electronic energy + Delta-G solvation = -11791.364421 eV Core-core repulsion = 9778.214711 eV Total energy + Delta-G solvation = -2013.149710 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.25351 -35.04453 -32.85612 -30.49459 -29.63964 -25.16061 -24.54733 -21.50486 -20.01732 -18.83607 -16.29034 -16.15554 -14.65676 -14.31345 -13.53029 -13.40940 -13.03283 -12.33574 -12.17863 -11.96344 -11.28510 -11.05330 -10.82843 -10.76587 -10.56504 -10.34684 -10.16338 -9.83250 -9.63742 -9.16115 -8.70920 -8.53224 -8.25893 -5.89137 -3.88838 3.40362 3.44189 3.48281 4.54900 5.18118 5.34497 5.47460 5.48198 5.74817 5.84432 5.90993 6.11769 6.24430 6.27581 6.33176 6.44623 6.54498 6.59444 6.77333 6.90083 6.96333 7.18755 7.34881 7.69942 7.90933 8.07251 8.50999 8.73078 9.17422 9.72483 11.21185 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044181 B = 0.014229 C = 0.011724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.603951 B = 1967.337155 C = 2387.718955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.064 0.936 4 C -0.104 4.104 5 C -0.151 4.151 6 C 0.111 3.889 7 H 0.033 0.967 8 O -0.549 6.549 9 C 0.045 3.955 10 H 0.060 0.940 11 C -0.496 4.496 12 H 0.049 0.951 13 C 0.063 3.937 14 N -0.896 5.896 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.279 1.279 19 C -0.092 4.092 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.348 0.652 28 H 0.259 0.741 29 H 0.039 0.961 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -2.107 -7.900 9.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.083 0.917 4 C -0.141 4.141 5 C -0.189 4.189 6 C 0.053 3.947 7 H 0.051 0.949 8 O -0.351 6.351 9 C 0.026 3.974 10 H 0.078 0.922 11 C -0.534 4.534 12 H 0.068 0.932 13 C -0.138 4.138 14 N -0.535 5.535 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.205 1.205 19 C -0.130 4.130 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.191 0.809 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.973 -1.613 -7.194 8.375 hybrid contribution 0.481 -0.730 0.251 0.910 sum -3.492 -2.343 -6.943 8.117 Atomic orbital electron populations 1.21814 0.96599 1.00951 1.00622 1.21305 0.94168 1.00059 0.96332 0.91728 1.21459 0.95136 1.00103 0.97447 1.22339 0.96224 1.01814 0.98561 1.22114 0.79748 0.97167 0.95705 0.94934 1.86799 1.20496 1.80692 1.47072 1.18787 0.90300 0.98109 0.90160 0.92207 1.20920 1.42665 0.93036 0.96783 0.93226 1.24932 0.95494 0.94825 0.98575 1.69932 1.48314 1.06207 1.29050 0.86709 0.80020 0.79233 0.82284 1.20292 1.21458 1.20453 1.21675 0.98472 0.97890 0.94964 0.93300 0.92944 0.93888 0.93203 0.92662 0.93583 0.91801 0.80914 0.93122 0.94228 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 37.16 0.34 -1.86 16 2 C -0.10 -1.85 2.72 -90.62 -0.25 -2.09 16 3 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.10 -1.72 5.20 -26.73 -0.14 -1.86 16 5 C -0.15 -2.71 5.54 -26.73 -0.15 -2.86 16 6 C 0.11 2.43 2.89 -26.73 -0.08 2.35 16 7 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 8 O -0.55 -12.25 12.94 -35.23 -0.46 -12.70 16 9 C 0.05 1.16 1.93 -91.77 -0.18 0.98 16 10 H 0.06 1.74 7.38 -51.93 -0.38 1.36 16 11 C -0.50 -14.24 7.95 -34.44 -0.27 -14.51 16 12 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 13 C 0.06 1.82 5.45 -17.82 -0.10 1.72 16 14 N -0.90 -27.01 12.84 55.43 0.71 -26.30 16 15 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.09 -2.07 4.46 -26.73 -0.12 -2.19 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.35 5.68 9.08 45.56 0.41 6.09 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -31.02 244.15 -6.19 -37.21 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.16 Total: 1.12 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.94 Total: -20.31 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.71 Total: -26.30 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.46 Total: -12.70 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.02 -6.19 -37.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.256 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds