Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47923 * 2 1 4 4 C 1.53006 * 109.46948 * 239.99727 * 2 1 3 5 5 C 1.52999 * 109.46951 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47305 * 59.99925 * 5 4 2 7 7 H 1.08993 * 109.46914 * 60.00043 * 6 5 4 8 8 O 1.42898 * 109.47074 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47109 * 300.00054 * 6 5 4 10 10 H 1.09001 * 109.47075 * 300.00075 * 9 6 5 11 11 C 1.50697 * 109.47049 * 179.97438 * 9 6 5 12 12 H 1.07997 * 120.00209 * 324.87423 * 11 9 6 13 13 C 1.37884 * 119.99952 * 144.86961 * 11 9 6 14 14 N 1.31514 * 119.99922 * 5.18872 * 13 11 9 15 15 Si 1.86799 * 120.00007 * 185.18103 * 13 11 9 16 16 H 1.48497 * 109.47031 * 60.00288 * 15 13 11 17 17 H 1.48498 * 109.46972 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47019 * 300.00320 * 15 13 11 19 19 C 1.52999 * 109.47081 * 59.99809 * 9 6 5 20 20 H 1.08993 * 109.47426 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46666 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46650 * 60.00218 * 1 2 3 23 23 H 1.09000 * 109.47401 * 60.00514 * 4 2 1 24 24 H 1.09001 * 109.47137 * 300.00090 * 4 2 1 25 25 H 1.09005 * 109.46979 * 179.97438 * 5 4 2 26 26 H 1.09005 * 109.47446 * 299.99801 * 5 4 2 27 27 H 0.96705 * 113.99761 * 300.00032 * 8 6 5 28 28 H 0.96998 * 120.00136 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.46949 * 60.00189 * 19 9 6 30 30 H 1.09005 * 109.46979 * 180.02562 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 1 3.7158 -2.4709 0.0002 8 8 5.5085 -1.4434 0.0009 9 6 3.5695 -0.7222 1.2496 10 1 3.9332 0.3054 1.2497 11 6 4.0709 -1.4332 2.4800 12 1 4.1713 -2.5085 2.4791 13 6 4.4014 -0.7109 3.6071 14 7 4.1836 0.5855 3.6446 15 14 5.1584 -1.5739 5.0807 16 1 6.4363 -2.2136 4.6771 17 1 5.4184 -0.5824 6.1552 18 1 4.2218 -2.6117 5.5815 19 6 2.0395 -0.7216 1.2492 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.6767 -0.2075 -2.1393 24 1 1.6766 -1.7490 -1.2492 25 1 3.9333 -1.2362 -2.1387 26 1 3.9337 0.3056 -1.2488 27 1 5.9021 -1.8850 -0.7641 28 1 4.4164 1.0937 4.4373 29 1 1.6759 -1.7492 1.2491 30 1 1.6762 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -105.050188 kcal Electronic energy + Delta-G solvation = -11792.300468 eV Core-core repulsion = 9778.214711 eV Total energy + Delta-G solvation = -2014.085757 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90073 -36.68334 -34.95044 -32.03835 -31.47893 -26.93378 -26.31462 -23.15899 -21.68834 -20.50009 -18.39757 -17.91509 -16.66267 -15.92375 -15.20188 -14.88247 -14.76534 -13.89313 -13.74550 -13.63025 -13.03025 -12.85346 -12.66013 -12.53120 -12.28607 -11.98088 -11.94850 -11.40934 -11.29197 -11.03371 -10.59492 -10.47407 -10.25969 -8.10303 -6.16591 1.37494 1.41244 1.48168 2.44075 3.19744 3.68606 3.98034 4.05188 4.29914 4.41793 4.44381 4.65133 4.75168 4.92401 4.94895 4.96624 5.06596 5.16322 5.29356 5.34001 5.39647 5.53210 5.63375 5.66956 5.88206 5.96235 6.38061 6.94981 7.28017 7.47694 8.99502 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044181 B = 0.014229 C = 0.011724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.603951 B = 1967.337155 C = 2387.718955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.046 0.954 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.112 3.888 7 H 0.039 0.961 8 O -0.579 6.579 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.513 4.513 12 H 0.044 0.956 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.083 4.083 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.375 0.625 28 H 0.259 0.741 29 H 0.045 0.955 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -3.235 -9.380 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.064 0.936 4 C -0.136 4.136 5 C -0.181 4.181 6 C 0.054 3.946 7 H 0.057 0.943 8 O -0.385 6.385 9 C 0.018 3.982 10 H 0.031 0.969 11 C -0.551 4.551 12 H 0.062 0.938 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.121 4.121 20 H 0.079 0.921 21 H 0.062 0.938 22 H 0.089 0.911 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.615 -2.761 -8.696 10.224 hybrid contribution 0.718 -0.391 0.690 1.070 sum -3.897 -3.151 -8.005 9.445 Atomic orbital electron populations 1.21751 0.93920 1.02061 1.01645 1.21239 0.96439 0.98662 0.95337 0.93552 1.21463 0.93856 1.01014 0.97290 1.22238 0.97358 1.00729 0.97775 1.21968 0.79699 0.97293 0.95669 0.94329 1.86717 1.21026 1.81445 1.49290 1.18786 0.92316 0.95577 0.91475 0.96855 1.21340 1.42479 0.92984 0.98291 0.93752 1.25754 0.96254 0.95554 1.01594 1.70073 1.49630 1.07613 1.29811 0.85705 0.79204 0.78386 0.78931 1.20040 1.20920 1.19203 1.21462 0.96397 0.98319 0.95949 0.92118 0.93796 0.91080 0.89878 0.91241 0.89868 0.93307 0.77855 0.93235 0.93614 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.19 71.98 0.66 -3.22 16 2 C -0.10 -3.50 2.72 -10.79 -0.03 -3.53 16 3 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.10 -2.92 5.20 30.60 0.16 -2.76 16 5 C -0.14 -4.76 5.54 30.60 0.17 -4.59 16 6 C 0.11 4.79 2.89 30.60 0.09 4.88 16 7 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 8 O -0.58 -25.49 12.94 -148.98 -1.93 -27.42 16 9 C 0.04 1.96 1.93 -11.54 -0.02 1.94 16 10 H 0.01 0.80 7.38 -2.39 -0.02 0.79 16 11 C -0.51 -30.11 7.95 25.60 0.20 -29.90 16 12 H 0.04 2.58 7.82 -2.91 -0.02 2.55 16 13 C 0.01 0.33 5.45 84.66 0.46 0.79 16 14 N -0.93 -58.16 12.84 21.45 0.28 -57.89 16 15 Si 0.95 46.54 29.54 68.60 2.03 48.57 16 16 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C -0.08 -3.79 4.46 30.59 0.14 -3.65 16 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.37 11.55 9.08 -74.05 -0.67 10.87 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -68.83 244.15 2.63 -66.20 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.42 Total: 10.59 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 1.83 Total: -40.05 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.28 Total: -57.89 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.93 Total: -27.42 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -68.83 2.63 -66.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.848 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds