Wall clock time and date at job start Mon Mar 30 2020 02:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.90690 * 2 1 4 4 N 1.47898 * 109.91873 * 121.10205 * 2 1 3 5 5 C 1.46899 * 111.00340 * 265.39449 * 4 2 1 6 6 C 1.48539 * 105.82159 * 144.87842 * 4 2 1 7 7 C 1.54932 * 103.22544 * 320.79517 * 6 4 2 8 8 C 1.53997 * 110.08281 * 238.79151 * 2 1 3 9 9 N 1.46904 * 110.30614 * 358.24469 * 8 2 1 10 10 C 1.50698 * 110.30927 * 120.40908 * 8 2 1 11 11 H 1.08001 * 119.99984 * 0.02562 * 10 8 2 12 12 C 1.37883 * 119.99651 * 179.97438 * 10 8 2 13 13 N 1.31514 * 120.00021 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99562 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47257 * 90.00554 * 14 12 10 16 16 H 1.48497 * 109.47213 * 210.00144 * 14 12 10 17 17 H 1.48502 * 109.47265 * 330.00052 * 14 12 10 18 18 H 1.08998 * 109.46800 * 300.70076 * 1 2 3 19 19 H 1.09001 * 109.47134 * 60.70140 * 1 2 3 20 20 H 1.09002 * 109.46667 * 180.70203 * 1 2 3 21 21 H 1.09006 * 109.46773 * 59.99669 * 5 4 2 22 22 H 1.08998 * 109.47826 * 180.02562 * 5 4 2 23 23 H 1.09001 * 109.47072 * 300.00467 * 5 4 2 24 24 H 1.08999 * 110.66370 * 79.22653 * 6 4 2 25 25 H 1.08994 * 110.66651 * 202.19073 * 6 4 2 26 26 H 1.09003 * 110.72313 * 155.76846 * 7 6 4 27 27 H 1.09002 * 110.72654 * 279.05425 * 7 6 4 28 28 H 1.00902 * 111.00017 * 179.97438 * 9 8 2 29 29 H 1.00899 * 111.00363 * 303.95370 * 9 8 2 30 30 H 0.97000 * 119.99645 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0339 -0.7183 1.1906 5 6 2.3168 0.2158 2.2885 6 6 3.2709 -1.4133 0.7509 7 6 2.9123 -1.9083 -0.6727 8 6 2.0588 -0.7494 -1.2370 9 7 0.9405 -1.2786 -2.0291 10 6 2.9103 0.1658 -2.0787 11 1 3.0689 1.1892 -1.7722 12 6 3.4877 -0.3037 -3.2394 13 7 3.2950 -1.5501 -3.6122 14 14 4.5438 0.8305 -4.2822 15 1 5.9573 0.7396 -3.8363 16 1 4.4474 0.4251 -5.7075 17 1 4.0662 2.2286 -4.1319 18 1 -0.3633 0.5247 0.8836 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0126 21 1 1.4031 0.7447 2.5600 22 1 2.6863 -0.3385 3.1512 23 1 3.0712 0.9346 1.9686 24 1 4.1106 -0.7191 0.7167 25 1 3.4944 -2.2534 1.4083 26 1 3.8131 -2.0502 -1.2700 27 1 2.3303 -2.8287 -0.6259 28 1 1.2755 -1.7718 -2.8432 29 1 0.3469 -1.8697 -1.4668 30 1 3.7009 -1.8803 -4.4290 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:46 Heat of formation + Delta-G solvation = 7.511045 kcal Electronic energy + Delta-G solvation = -12093.282301 eV Core-core repulsion = 10116.370317 eV Total energy + Delta-G solvation = -1976.911984 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.50009 -33.87750 -31.51927 -30.20190 -28.14628 -26.09254 -24.01355 -22.96561 -20.14208 -18.25577 -16.46773 -15.13848 -14.55257 -14.24308 -13.79752 -13.53953 -12.77395 -12.23507 -12.08278 -11.65229 -11.28531 -11.01655 -10.98082 -10.64940 -10.45969 -10.33147 -10.30462 -10.10131 -9.30517 -8.96182 -8.52648 -7.67718 -6.91565 -6.08469 -4.12357 3.27346 3.34833 3.38731 4.38689 4.84411 5.20093 5.68489 5.80537 5.93236 6.15973 6.18317 6.26086 6.30598 6.42657 6.47172 6.63063 6.76705 6.95794 7.04733 7.15980 7.28350 7.62771 7.66137 7.87841 7.88794 8.32751 8.72019 9.10868 9.32277 9.56599 10.99853 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048397 B = 0.014984 C = 0.014274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.411019 B = 1868.265154 C = 1961.143949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.068 3.932 3 H 0.043 0.957 4 N -0.526 5.526 5 C 0.020 3.980 6 C 0.039 3.961 7 C -0.132 4.132 8 C 0.245 3.755 9 N -0.838 5.838 10 C -0.496 4.496 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.274 1.274 18 H 0.025 0.975 19 H 0.064 0.936 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.357 0.643 29 H 0.298 0.702 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 0.745 5.968 6.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.040 4.040 3 H 0.062 0.938 4 N -0.251 5.251 5 C -0.129 4.129 6 C -0.090 4.090 7 C -0.173 4.173 8 C 0.153 3.847 9 N -0.370 5.370 10 C -0.535 4.535 11 H 0.074 0.926 12 C -0.132 4.132 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.209 1.209 16 H -0.212 1.212 17 H -0.199 1.199 18 H 0.044 0.956 19 H 0.083 0.917 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.175 0.825 29 H 0.109 0.891 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.628 1.026 5.896 6.202 hybrid contribution 1.736 0.223 -0.567 1.840 sum 0.109 1.249 5.329 5.474 Atomic orbital electron populations 1.21454 0.95044 1.00984 0.99444 1.22585 0.95212 0.96129 0.90093 0.93847 1.64714 1.26624 1.26350 1.07388 1.22420 0.99778 0.95431 0.95297 1.23123 0.91070 0.97114 0.97647 1.23203 1.02485 0.98406 0.93160 1.19048 0.86795 0.90504 0.88369 1.59378 1.22048 1.43679 1.11932 1.21097 1.28372 0.97029 1.06966 0.92648 1.24938 0.95986 0.95035 0.97215 1.69665 1.45090 1.14467 1.24127 0.86552 0.80356 0.81185 0.79608 1.20878 1.21177 1.19938 0.95581 0.91679 0.93032 0.92280 0.92493 0.95972 0.94401 0.92396 0.90285 0.94444 0.82487 0.89103 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.50 37.16 0.32 -1.87 16 2 C 0.07 1.50 2.73 -66.64 -0.18 1.32 16 3 H 0.04 1.01 6.98 -51.93 -0.36 0.65 16 4 N -0.53 -10.59 5.18 -230.78 -1.20 -11.78 16 5 C 0.02 0.34 9.40 60.06 0.56 0.90 16 6 C 0.04 0.80 6.56 -1.90 -0.01 0.79 16 7 C -0.13 -3.11 5.86 -24.87 -0.15 -3.25 16 8 C 0.25 6.00 0.81 -131.39 -0.11 5.90 16 9 N -0.84 -20.10 7.75 0.91 0.01 -20.09 16 10 C -0.50 -13.43 8.19 -34.44 -0.28 -13.72 16 11 H 0.06 1.52 7.34 -52.49 -0.39 1.14 16 12 C 0.07 1.88 5.00 -17.82 -0.09 1.79 16 13 N -0.89 -24.26 10.26 55.43 0.57 -23.69 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 19 H 0.06 1.33 7.89 -51.93 -0.41 0.92 16 20 H 0.05 1.00 6.75 -51.93 -0.35 0.65 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 24 H 0.04 0.80 7.96 -51.93 -0.41 0.39 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 2.05 6.77 -51.93 -0.35 1.70 16 27 H 0.04 0.86 8.02 -51.93 -0.42 0.45 16 28 H 0.36 9.19 6.83 -39.29 -0.27 8.92 16 29 H 0.30 6.55 7.16 -39.29 -0.28 6.27 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 235.69 15.07 3.55 3.55 Total: -1.00 -27.03 235.69 -6.51 -33.53 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.48 Total: 10.55 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 0.06 Total: -8.16 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.62 Total: -55.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.03 -6.51 -33.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.044 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds