Wall clock time and date at job start Mon Mar 30 2020 02:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.90690 * 2 1 4 4 N 1.47898 * 109.91873 * 121.10205 * 2 1 3 5 5 C 1.46899 * 111.00340 * 265.39449 * 4 2 1 6 6 C 1.48539 * 105.82159 * 144.87842 * 4 2 1 7 7 C 1.54932 * 103.22544 * 320.79517 * 6 4 2 8 8 C 1.53997 * 110.08281 * 238.79151 * 2 1 3 9 9 N 1.46904 * 110.30614 * 358.24469 * 8 2 1 10 10 C 1.50698 * 110.30927 * 120.40908 * 8 2 1 11 11 H 1.08001 * 119.99984 * 0.02562 * 10 8 2 12 12 C 1.37883 * 119.99651 * 179.97438 * 10 8 2 13 13 N 1.31514 * 120.00021 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99562 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47257 * 90.00554 * 14 12 10 16 16 H 1.48497 * 109.47213 * 210.00144 * 14 12 10 17 17 H 1.48502 * 109.47265 * 330.00052 * 14 12 10 18 18 H 1.08998 * 109.46800 * 300.70076 * 1 2 3 19 19 H 1.09001 * 109.47134 * 60.70140 * 1 2 3 20 20 H 1.09002 * 109.46667 * 180.70203 * 1 2 3 21 21 H 1.09006 * 109.46773 * 59.99669 * 5 4 2 22 22 H 1.08998 * 109.47826 * 180.02562 * 5 4 2 23 23 H 1.09001 * 109.47072 * 300.00467 * 5 4 2 24 24 H 1.08999 * 110.66370 * 79.22653 * 6 4 2 25 25 H 1.08994 * 110.66651 * 202.19073 * 6 4 2 26 26 H 1.09003 * 110.72313 * 155.76846 * 7 6 4 27 27 H 1.09002 * 110.72654 * 279.05425 * 7 6 4 28 28 H 1.00902 * 111.00017 * 179.97438 * 9 8 2 29 29 H 1.00899 * 111.00363 * 303.95370 * 9 8 2 30 30 H 0.97000 * 119.99645 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 7 2.0339 -0.7183 1.1906 5 6 2.3168 0.2158 2.2885 6 6 3.2709 -1.4133 0.7509 7 6 2.9123 -1.9083 -0.6727 8 6 2.0588 -0.7494 -1.2370 9 7 0.9405 -1.2786 -2.0291 10 6 2.9103 0.1658 -2.0787 11 1 3.0689 1.1892 -1.7722 12 6 3.4877 -0.3037 -3.2394 13 7 3.2950 -1.5501 -3.6122 14 14 4.5438 0.8305 -4.2822 15 1 5.9573 0.7396 -3.8363 16 1 4.4474 0.4251 -5.7075 17 1 4.0662 2.2286 -4.1319 18 1 -0.3633 0.5247 0.8836 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0126 21 1 1.4031 0.7447 2.5600 22 1 2.6863 -0.3385 3.1512 23 1 3.0712 0.9346 1.9686 24 1 4.1106 -0.7191 0.7167 25 1 3.4944 -2.2534 1.4083 26 1 3.8131 -2.0502 -1.2700 27 1 2.3303 -2.8287 -0.6259 28 1 1.2755 -1.7718 -2.8432 29 1 0.3469 -1.8697 -1.4668 30 1 3.7009 -1.8803 -4.4290 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:46 Heat of formation + Delta-G solvation = -12.030487 kcal Electronic energy + Delta-G solvation = -12094.129685 eV Core-core repulsion = 10116.370317 eV Total energy + Delta-G solvation = -1977.759369 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.22957 -35.70388 -33.43145 -31.92497 -29.84831 -28.05683 -25.56227 -24.77642 -21.90454 -20.04689 -18.40653 -17.12006 -16.23113 -16.02397 -15.49407 -15.22998 -14.50439 -13.85618 -13.78936 -13.37728 -13.07506 -12.87885 -12.74118 -12.48154 -12.21206 -12.06343 -11.98332 -11.83191 -11.16799 -10.87118 -10.57121 -9.29561 -8.81775 -8.12453 -6.22828 1.38986 1.42040 1.50590 2.42035 3.13793 3.26929 4.10308 4.20263 4.37172 4.47996 4.63655 4.66386 4.73780 4.80536 4.95391 4.99285 5.10761 5.19331 5.25334 5.37765 5.62560 5.67111 5.83722 5.94258 6.30967 6.38956 6.67999 7.13938 7.38085 7.50523 8.93670 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048397 B = 0.014984 C = 0.014274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.411019 B = 1868.265154 C = 1961.143949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.070 3.930 3 H 0.026 0.974 4 N -0.525 5.525 5 C 0.018 3.982 6 C 0.045 3.955 7 C -0.127 4.127 8 C 0.233 3.767 9 N -0.838 5.838 10 C -0.519 4.519 11 H 0.041 0.959 12 C 0.031 3.969 13 N -0.908 5.908 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.282 1.282 17 H -0.276 1.276 18 H 0.049 0.951 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.016 0.984 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.345 0.655 29 H 0.310 0.690 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 0.960 6.994 7.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.039 4.039 3 H 0.044 0.956 4 N -0.249 5.249 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.168 4.168 8 C 0.141 3.859 9 N -0.370 5.370 10 C -0.557 4.557 11 H 0.060 0.940 12 C -0.169 4.169 13 N -0.548 5.548 14 Si 0.777 3.223 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.201 1.201 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.100 0.900 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.162 0.838 29 H 0.122 0.878 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.798 1.244 6.944 7.280 hybrid contribution 1.784 0.151 -0.867 1.989 sum -0.014 1.395 6.077 6.235 Atomic orbital electron populations 1.21340 0.93280 1.01336 0.99998 1.22482 0.96629 0.94854 0.89932 0.95633 1.64751 1.26112 1.26919 1.07154 1.22533 1.00606 0.95189 0.94723 1.23067 0.91129 0.97768 0.96375 1.23026 1.00951 0.98191 0.94633 1.19129 0.86917 0.90729 0.89137 1.59315 1.22144 1.43753 1.11753 1.21332 1.29524 0.96926 1.07960 0.94029 1.25545 0.96979 0.96266 0.98133 1.69755 1.45394 1.15339 1.24263 0.85688 0.79008 0.79397 0.78229 1.20424 1.20777 1.20095 0.93221 0.92880 0.92739 0.90721 0.90040 0.96502 0.95224 0.89910 0.93296 0.94531 0.83787 0.87835 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.81 8.50 71.98 0.61 -3.20 16 2 C 0.07 2.99 2.73 45.06 0.12 3.11 16 3 H 0.03 1.17 6.98 -2.39 -0.02 1.16 16 4 N -0.52 -19.93 5.18 -884.06 -4.58 -24.51 16 5 C 0.02 0.56 9.40 127.69 1.20 1.76 16 6 C 0.04 1.79 6.56 86.65 0.57 2.35 16 7 C -0.13 -5.97 5.86 31.80 0.19 -5.78 16 8 C 0.23 11.39 0.81 3.66 0.00 11.39 16 9 N -0.84 -40.03 7.75 -151.03 -1.17 -41.20 16 10 C -0.52 -28.34 8.19 25.60 0.21 -28.13 16 11 H 0.04 2.32 7.34 -2.91 -0.02 2.30 16 12 C 0.03 1.66 5.00 84.66 0.42 2.08 16 13 N -0.91 -49.54 10.26 21.45 0.22 -49.32 16 14 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 19 H 0.05 2.10 7.89 -2.39 -0.02 2.08 16 20 H 0.05 1.99 6.75 -2.39 -0.02 1.97 16 21 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.02 0.53 8.00 -2.39 -0.02 0.51 16 24 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.05 2.56 6.77 -2.39 -0.02 2.54 16 27 H 0.04 1.67 8.02 -2.39 -0.02 1.65 16 28 H 0.35 17.90 6.83 -89.69 -0.61 17.29 16 29 H 0.31 13.37 7.16 -89.69 -0.64 12.73 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -56.19 235.69 -0.31 -56.50 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.13 Total: 29.51 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 3.33 Total: -16.42 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.53 Total: -115.03 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -56.19 -0.31 -56.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.472 kcal (2) G-P(sol) polarization free energy of solvation -56.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds