Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.46961 * 2 1 4 4 C 1.48553 * 111.00080 * 290.12587 * 3 2 1 5 5 C 1.54378 * 104.59502 * 200.95936 * 4 3 2 6 6 C 1.54268 * 105.05972 * 23.85287 * 5 4 3 7 7 N 1.46900 * 110.32335 * 118.99801 * 6 5 4 8 8 C 1.50700 * 110.32217 * 241.10373 * 6 5 4 9 9 H 1.07999 * 119.99988 * 118.54434 * 8 6 5 10 10 C 1.37885 * 120.00047 * 298.54614 * 8 6 5 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 6 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47021 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47081 * 119.99727 * 12 10 8 15 15 H 1.48501 * 109.47213 * 240.00099 * 12 10 8 16 16 C 1.48561 * 110.99841 * 174.70365 * 3 2 1 17 17 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47307 * 299.99993 * 1 2 3 19 19 H 1.09003 * 109.47281 * 60.00174 * 1 2 3 20 20 H 1.08995 * 109.47307 * 240.00007 * 2 1 3 21 21 H 1.09003 * 109.47281 * 119.99826 * 2 1 3 22 22 H 1.08996 * 110.41558 * 82.18391 * 4 3 2 23 23 H 1.09004 * 110.51347 * 319.78512 * 4 3 2 24 24 H 1.08994 * 110.32911 * 264.95506 * 5 4 3 25 25 H 1.09002 * 110.32629 * 142.74634 * 5 4 3 26 26 H 1.00902 * 111.00128 * 62.82861 * 7 6 5 27 27 H 1.00899 * 110.99876 * 186.77946 * 7 6 5 28 28 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 29 29 H 1.09000 * 110.41069 * 40.26732 * 16 3 2 30 30 H 1.09001 * 110.41375 * 277.82155 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3576 6 6 3.8978 2.8150 -0.4167 7 7 5.1599 2.7293 -1.1634 8 6 4.0254 3.8038 0.7134 9 1 3.8890 3.4779 1.7340 10 6 4.3162 5.1245 0.4444 11 7 4.4876 5.5201 -0.7981 12 14 4.4750 6.3499 1.8452 13 1 4.2442 5.6565 3.1380 14 1 5.8381 6.9391 1.8353 15 1 3.4683 7.4285 1.6759 16 6 3.4991 1.4266 0.1280 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 0.7222 2.4153 -1.3340 23 1 1.9274 1.3555 -2.1261 24 1 2.2719 4.1377 -1.0021 25 1 3.1157 3.3571 -2.3738 26 1 5.4166 3.6277 -1.5441 27 1 5.8981 2.3577 -0.5844 28 1 4.6918 6.4493 -0.9873 29 1 3.9548 0.6381 -0.4709 30 1 3.7932 1.3295 1.1731 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056594.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -1.498218 kcal Electronic energy + Delta-G solvation = -11828.252339 eV Core-core repulsion = 9850.949684 eV Total energy + Delta-G solvation = -1977.302655 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.20816 -34.38991 -31.64587 -30.07812 -28.19195 -26.32407 -24.25631 -22.19210 -19.91952 -18.79394 -16.47458 -15.04707 -14.71423 -14.51729 -13.94915 -13.45722 -12.86796 -12.40453 -12.27149 -11.95277 -11.29018 -11.09104 -10.89744 -10.66685 -10.50226 -10.36372 -10.14360 -9.86653 -9.58167 -9.14649 -8.46242 -7.66765 -7.15330 -5.98985 -4.11102 3.27199 3.36049 3.41190 4.41125 4.76122 5.23691 5.41200 5.61913 5.79452 5.93823 6.07198 6.11716 6.24771 6.28308 6.42672 6.45049 6.62030 6.65582 6.98015 7.26912 7.31974 7.67353 7.84692 7.88866 7.91093 8.25476 8.82667 9.04300 9.18025 9.58165 10.99957 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.012780 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.411148 B = 2190.441645 C = 2350.555742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.504 5.504 4 C 0.034 3.966 5 C -0.083 4.083 6 C 0.234 3.766 7 N -0.850 5.850 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.048 3.952 17 H 0.049 0.951 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.026 0.974 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.355 0.645 27 H 0.310 0.690 28 H 0.261 0.739 29 H 0.028 0.972 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -6.310 0.079 7.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 N -0.228 5.228 4 C -0.094 4.094 5 C -0.122 4.122 6 C 0.142 3.858 7 N -0.380 5.380 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.138 4.138 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.080 4.080 17 H 0.068 0.932 18 H 0.079 0.921 19 H 0.070 0.930 20 H 0.044 0.956 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.172 0.828 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.302 -6.389 -0.070 7.703 hybrid contribution 0.778 1.001 0.805 1.502 sum -3.524 -5.388 0.736 6.480 Atomic orbital electron populations 1.21720 0.95559 1.00490 1.02333 1.22203 0.95742 0.91216 0.99873 1.65329 1.12875 1.13334 1.31269 1.23156 0.99858 0.97051 0.89366 1.22131 0.95125 0.95843 0.99075 1.18960 0.87618 0.89032 0.90209 1.59532 1.05645 1.33572 1.39210 1.21858 1.47358 0.93615 0.93568 0.92614 1.24996 0.95045 0.98221 0.95558 1.69784 1.49060 1.16830 1.17612 0.86537 0.77428 0.81235 0.82761 1.19860 1.21247 1.21059 1.23165 0.86447 0.98658 0.99750 0.93170 0.92079 0.92964 0.95626 0.91648 0.92028 0.95557 0.91390 0.93069 0.82837 0.88129 0.92880 0.95359 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.97 37.16 0.37 -1.67 16 2 C 0.04 0.65 5.53 -3.82 -0.02 0.63 16 3 N -0.50 -10.41 5.37 -229.98 -1.24 -11.64 16 4 C 0.03 0.70 5.73 -2.19 -0.01 0.69 16 5 C -0.08 -2.00 5.54 -25.35 -0.14 -2.14 16 6 C 0.23 5.77 0.88 -131.37 -0.12 5.66 16 7 N -0.85 -20.36 8.79 0.93 0.01 -20.36 16 8 C -0.52 -14.20 8.07 -34.44 -0.28 -14.48 16 9 H 0.06 1.55 7.53 -52.49 -0.40 1.16 16 10 C 0.06 1.71 5.00 -17.82 -0.09 1.62 16 11 N -0.89 -24.43 10.66 55.43 0.59 -23.84 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 C 0.05 1.06 5.70 -2.18 -0.01 1.05 16 17 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 19 H 0.05 0.74 7.26 -51.93 -0.38 0.37 16 20 H 0.03 0.42 7.88 -51.93 -0.41 0.01 16 21 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 22 H 0.06 1.19 7.76 -51.93 -0.40 0.79 16 23 H 0.03 0.52 7.83 -51.93 -0.41 0.11 16 24 H 0.07 1.81 7.24 -51.93 -0.38 1.43 16 25 H 0.05 1.26 7.95 -51.93 -0.41 0.85 16 26 H 0.36 9.12 7.07 -39.29 -0.28 8.84 16 27 H 0.31 7.03 9.03 -39.29 -0.35 6.68 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.03 0.61 7.91 -51.93 -0.41 0.19 16 30 H 0.06 1.46 7.67 -51.93 -0.40 1.06 16 LS Contribution 239.96 15.07 3.62 3.62 Total: -1.00 -27.32 239.96 -6.96 -34.28 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.62 Total: 10.35 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.30 Total: -8.66 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.64 Total: -55.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.32 -6.96 -34.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056594.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.783 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds