Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.46961 * 2 1 4 4 C 1.48553 * 111.00080 * 290.12587 * 3 2 1 5 5 C 1.54378 * 104.59502 * 200.95936 * 4 3 2 6 6 C 1.54268 * 105.05972 * 23.85287 * 5 4 3 7 7 N 1.46900 * 110.32335 * 118.99801 * 6 5 4 8 8 C 1.50700 * 110.32217 * 241.10373 * 6 5 4 9 9 H 1.07999 * 119.99988 * 118.54434 * 8 6 5 10 10 C 1.37885 * 120.00047 * 298.54614 * 8 6 5 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 6 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47021 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47081 * 119.99727 * 12 10 8 15 15 H 1.48501 * 109.47213 * 240.00099 * 12 10 8 16 16 C 1.48561 * 110.99841 * 174.70365 * 3 2 1 17 17 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47307 * 299.99993 * 1 2 3 19 19 H 1.09003 * 109.47281 * 60.00174 * 1 2 3 20 20 H 1.08995 * 109.47307 * 240.00007 * 2 1 3 21 21 H 1.09003 * 109.47281 * 119.99826 * 2 1 3 22 22 H 1.08996 * 110.41558 * 82.18391 * 4 3 2 23 23 H 1.09004 * 110.51347 * 319.78512 * 4 3 2 24 24 H 1.08994 * 110.32911 * 264.95506 * 5 4 3 25 25 H 1.09002 * 110.32629 * 142.74634 * 5 4 3 26 26 H 1.00902 * 111.00128 * 62.82861 * 7 6 5 27 27 H 1.00899 * 110.99876 * 186.77946 * 7 6 5 28 28 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 29 29 H 1.09000 * 110.41069 * 40.26732 * 16 3 2 30 30 H 1.09001 * 110.41375 * 277.82155 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3576 6 6 3.8978 2.8150 -0.4167 7 7 5.1599 2.7293 -1.1634 8 6 4.0254 3.8038 0.7134 9 1 3.8890 3.4779 1.7340 10 6 4.3162 5.1245 0.4444 11 7 4.4876 5.5201 -0.7981 12 14 4.4750 6.3499 1.8452 13 1 4.2442 5.6565 3.1380 14 1 5.8381 6.9391 1.8353 15 1 3.4683 7.4285 1.6759 16 6 3.4991 1.4266 0.1280 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8899 21 1 1.8934 -0.5138 0.8900 22 1 0.7222 2.4153 -1.3340 23 1 1.9274 1.3555 -2.1261 24 1 2.2719 4.1377 -1.0021 25 1 3.1157 3.3571 -2.3738 26 1 5.4166 3.6277 -1.5441 27 1 5.8981 2.3577 -0.5844 28 1 4.6918 6.4493 -0.9873 29 1 3.9548 0.6381 -0.4709 30 1 3.7932 1.3295 1.1731 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056594.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -21.679498 kcal Electronic energy + Delta-G solvation = -11829.127465 eV Core-core repulsion = 9850.949684 eV Total energy + Delta-G solvation = -1978.177781 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.92652 -36.15130 -33.50810 -31.75795 -29.86094 -28.22676 -26.13465 -23.68481 -21.51311 -20.69955 -18.46565 -16.75484 -16.50396 -16.28140 -15.54718 -15.24427 -14.62692 -13.97697 -13.93783 -13.51001 -12.99196 -12.90084 -12.60003 -12.34910 -12.28656 -11.95477 -11.88417 -11.58749 -11.55016 -11.03487 -10.51390 -9.25860 -9.13884 -8.03805 -6.23247 1.37026 1.41271 1.51136 2.42016 3.11739 3.26570 4.07840 4.16387 4.32096 4.45145 4.48156 4.60315 4.68001 4.78929 4.85837 5.02089 5.08718 5.16736 5.36418 5.39977 5.47859 5.73376 5.76319 6.09920 6.21505 6.36857 6.77984 7.05790 7.17633 7.49555 8.92009 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.012780 C = 0.011909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.411148 B = 2190.441645 C = 2350.555742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 N -0.519 5.519 4 C 0.044 3.956 5 C -0.078 4.078 6 C 0.221 3.779 7 N -0.843 5.843 8 C -0.540 4.540 9 H 0.041 0.959 10 C 0.024 3.976 11 N -0.909 5.909 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.284 1.284 16 C 0.057 3.943 17 H 0.079 0.921 18 H 0.054 0.946 19 H 0.050 0.950 20 H 0.033 0.967 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.345 0.655 27 H 0.316 0.684 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -7.172 0.371 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 N -0.243 5.243 4 C -0.084 4.084 5 C -0.117 4.117 6 C 0.129 3.871 7 N -0.371 5.371 8 C -0.580 4.580 9 H 0.060 0.940 10 C -0.176 4.176 11 N -0.549 5.549 12 Si 0.776 3.224 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.210 1.210 16 C -0.071 4.071 17 H 0.098 0.902 18 H 0.073 0.927 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.160 0.840 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.933 -7.271 0.225 8.789 hybrid contribution 0.974 1.252 0.710 1.738 sum -3.959 -6.018 0.934 7.264 Atomic orbital electron populations 1.21688 0.93507 1.02346 1.01965 1.22341 0.97403 0.88888 1.00637 1.65308 1.11679 1.16142 1.31199 1.23039 0.99454 0.95884 0.90036 1.21965 0.95817 0.96057 0.97886 1.19090 0.87928 0.90210 0.89849 1.59537 1.05780 1.32700 1.39115 1.22039 1.47797 0.94640 0.93572 0.94044 1.25593 0.94872 0.99603 0.97512 1.69872 1.49157 1.17070 1.18752 0.85653 0.77422 0.79135 0.80188 1.20034 1.20657 1.21006 1.22969 0.87790 0.97171 0.99188 0.90249 0.92674 0.93090 0.94915 0.90759 0.90647 0.94229 0.94563 0.94347 0.84023 0.87483 0.92839 0.94639 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.97 71.98 0.72 -2.76 16 2 C 0.04 1.09 5.53 86.30 0.48 1.57 16 3 N -0.52 -20.54 5.37 -881.52 -4.73 -25.28 16 4 C 0.04 1.75 5.73 86.45 0.50 2.24 16 5 C -0.08 -3.78 5.54 31.49 0.17 -3.61 16 6 C 0.22 10.89 0.88 3.68 0.00 10.90 16 7 N -0.84 -40.24 8.79 -150.97 -1.33 -41.57 16 8 C -0.54 -29.41 8.07 25.60 0.21 -29.21 16 9 H 0.04 2.32 7.53 -2.91 -0.02 2.30 16 10 C 0.02 1.30 5.00 84.66 0.42 1.72 16 11 N -0.91 -49.92 10.66 21.45 0.23 -49.69 16 12 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 C 0.06 2.48 5.70 86.45 0.49 2.97 16 17 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 18 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 19 H 0.05 1.30 7.26 -2.39 -0.02 1.28 16 20 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 21 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 22 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 23 H 0.04 1.47 7.83 -2.38 -0.02 1.45 16 24 H 0.04 1.94 7.24 -2.39 -0.02 1.92 16 25 H 0.04 1.90 7.95 -2.39 -0.02 1.88 16 26 H 0.35 17.79 7.07 -89.69 -0.63 17.16 16 27 H 0.32 14.23 9.03 -89.69 -0.81 13.42 16 28 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 29 H 0.04 1.46 7.91 -2.39 -0.02 1.44 16 30 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 Total: -1.00 -56.70 239.96 -1.14 -57.83 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.32 Total: 29.17 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 2.99 Total: -16.17 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -5.83 Total: -116.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -56.70 -1.14 -57.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056594.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.152 kcal (2) G-P(sol) polarization free energy of solvation -56.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds