Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00488 * 3 2 1 5 5 H 1.48498 * 109.46721 * 29.99904 * 3 2 1 6 6 H 1.48497 * 109.47362 * 149.99848 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.53001 * 109.47213 * 179.97438 * 9 7 2 13 13 H 1.09002 * 109.49755 * 59.92216 * 12 9 7 14 14 C 1.53115 * 109.50310 * 179.97438 * 12 9 7 15 15 C 1.53124 * 109.15849 * 177.59821 * 14 12 9 16 16 C 1.53029 * 109.27913 * 302.34370 * 15 14 12 17 17 N 1.46847 * 109.52278 * 59.17965 * 16 15 14 18 18 C 1.46842 * 111.19964 * 298.25949 * 17 16 15 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 21 21 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 22 22 H 1.09002 * 109.52497 * 297.49931 * 14 12 9 23 23 H 1.08997 * 109.52571 * 57.62638 * 14 12 9 24 24 H 1.08999 * 109.50099 * 62.28747 * 15 14 12 25 25 H 1.09003 * 109.50141 * 182.36644 * 15 14 12 26 26 H 1.08994 * 109.46807 * 179.19344 * 16 15 14 27 27 H 1.09001 * 109.46478 * 299.16369 * 16 15 14 28 28 H 1.00908 * 111.00125 * 174.15867 * 17 16 15 29 29 H 1.08999 * 109.46161 * 301.72466 * 18 17 16 30 30 H 1.09004 * 109.46482 * 181.75468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2452 -3.6621 0.0005 13 1 2.8730 -3.6041 0.8897 14 6 1.4803 -4.9885 0.0012 15 6 2.4811 -6.1458 -0.0594 16 6 3.3508 -5.9967 -1.3097 17 7 4.0621 -4.7128 -1.2625 18 6 3.1218 -3.5850 -1.2515 19 1 -0.4850 0.8401 0.0004 20 1 -0.3005 -1.8576 -1.1911 21 1 0.9651 -2.5260 -2.0381 22 1 0.8877 -5.0669 0.9127 23 1 0.8215 -5.0296 -0.8662 24 1 3.1135 -6.1269 0.8282 25 1 1.9413 -7.0919 -0.1017 26 1 4.0740 -6.8112 -1.3484 27 1 2.7193 -6.0296 -2.1975 28 1 4.7144 -4.6324 -2.0282 29 1 2.4913 -3.6291 -2.1395 30 1 3.6786 -2.6479 -1.2478 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260076746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -19.046836 kcal Electronic energy + Delta-G solvation = -11781.263945 eV Core-core repulsion = 9803.200324 eV Total energy + Delta-G solvation = -1978.063620 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.21850 -34.56381 -31.78638 -31.00831 -28.84589 -25.87044 -23.13593 -22.99926 -20.28188 -18.31944 -16.34589 -15.95653 -14.83731 -14.38989 -13.94745 -13.22976 -12.97422 -12.81465 -12.29858 -12.15334 -11.92652 -11.07024 -10.90475 -10.81952 -10.43600 -10.18730 -10.00214 -9.74737 -9.34067 -9.06140 -8.51526 -7.91283 -7.07906 -5.99973 -4.15509 3.25188 3.33037 3.37007 4.38073 4.74420 5.22321 5.41634 5.49656 5.66409 5.92276 6.03069 6.18424 6.23919 6.42129 6.45038 6.64559 6.69667 6.72027 7.06035 7.11203 7.35292 7.61647 7.76046 7.82886 7.91994 8.24823 8.80350 9.05673 9.22003 9.56149 10.97509 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063437 B = 0.011873 C = 0.010758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.278027 B = 2357.741211 C = 2602.087562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.214 3.786 10 H 0.036 0.964 11 N -0.851 5.851 12 C -0.065 4.065 13 H 0.059 0.941 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.061 3.939 17 N -0.695 5.695 18 C 0.071 3.929 19 H 0.263 0.737 20 H 0.350 0.650 21 H 0.307 0.693 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.331 0.669 29 H 0.028 0.972 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -7.455 -2.683 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.104 3.896 10 H 0.054 0.946 11 N -0.381 5.381 12 C -0.085 4.085 13 H 0.077 0.923 14 C -0.147 4.147 15 C -0.156 4.156 16 C -0.068 4.068 17 N -0.326 5.326 18 C -0.058 4.058 19 H 0.073 0.927 20 H 0.166 0.834 21 H 0.116 0.884 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.147 0.853 29 H 0.046 0.954 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.930 -8.073 -1.702 9.139 hybrid contribution 0.553 2.030 -1.091 2.370 sum 4.482 -6.043 -2.793 8.026 Atomic orbital electron populations 1.69754 1.05833 1.26832 1.51117 1.25038 0.94869 0.99206 0.94731 0.86614 0.79990 0.83485 0.78003 1.20824 1.21250 1.19897 1.22039 0.93657 0.91988 1.50838 0.92597 1.18901 0.89978 0.89870 0.90881 0.94650 1.59543 1.18592 1.55678 1.04255 1.21152 0.96041 0.94790 0.96515 0.92279 1.21557 0.97135 0.94108 1.01882 1.21626 0.97754 0.98410 0.97835 1.21839 0.96045 0.91771 0.97157 1.60377 1.19792 1.02453 1.49959 1.21969 0.93483 0.92427 0.97881 0.92741 0.83438 0.88353 0.93059 0.91319 0.92026 0.92794 0.92134 0.95812 0.85297 0.95355 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 11.54 55.43 0.64 -24.49 16 2 C 0.06 1.72 5.38 -17.82 -0.10 1.63 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.55 -14.67 8.01 -34.44 -0.28 -14.95 16 8 H 0.06 1.51 6.73 -52.48 -0.35 1.15 16 9 C 0.21 5.33 2.54 -68.86 -0.17 5.16 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 N -0.85 -20.26 8.33 -5.65 -0.05 -20.31 16 12 C -0.07 -1.39 2.19 -90.54 -0.20 -1.59 16 13 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.11 -2.06 5.16 -26.61 -0.14 -2.19 16 15 C -0.12 -1.87 6.09 -26.65 -0.16 -2.04 16 16 C 0.06 0.93 6.55 -3.84 -0.03 0.90 16 17 N -0.70 -11.55 6.84 -113.83 -0.78 -12.33 16 18 C 0.07 1.38 5.25 -3.84 -0.02 1.36 16 19 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 20 H 0.35 9.07 7.08 -39.29 -0.28 8.79 16 21 H 0.31 7.05 7.13 -39.29 -0.28 6.77 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.33 4.73 8.90 -39.29 -0.35 4.38 16 29 H 0.03 0.56 6.62 -51.93 -0.34 0.21 16 30 H 0.08 1.61 6.66 -51.93 -0.35 1.26 16 LS Contribution 234.70 15.07 3.54 3.54 Total: -1.00 -27.25 234.70 -7.20 -34.45 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -4.44 Total: 14.70 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.09 Total: -11.72 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.19 Total: -57.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.25 -7.20 -34.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.399 kcal (2) G-P(sol) polarization free energy of solvation -27.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds