Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00488 * 3 2 1 5 5 H 1.48498 * 109.46721 * 29.99904 * 3 2 1 6 6 H 1.48497 * 109.47362 * 149.99848 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.53001 * 109.47213 * 179.97438 * 9 7 2 13 13 H 1.09002 * 109.49755 * 59.92216 * 12 9 7 14 14 C 1.53115 * 109.50310 * 179.97438 * 12 9 7 15 15 C 1.53124 * 109.15849 * 177.59821 * 14 12 9 16 16 C 1.53029 * 109.27913 * 302.34370 * 15 14 12 17 17 N 1.46847 * 109.52278 * 59.17965 * 16 15 14 18 18 C 1.46842 * 111.19964 * 298.25949 * 17 16 15 19 19 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 20 20 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 21 21 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 22 22 H 1.09002 * 109.52497 * 297.49931 * 14 12 9 23 23 H 1.08997 * 109.52571 * 57.62638 * 14 12 9 24 24 H 1.08999 * 109.50099 * 62.28747 * 15 14 12 25 25 H 1.09003 * 109.50141 * 182.36644 * 15 14 12 26 26 H 1.08994 * 109.46807 * 179.19344 * 16 15 14 27 27 H 1.09001 * 109.46478 * 299.16369 * 16 15 14 28 28 H 1.00908 * 111.00125 * 174.15867 * 17 16 15 29 29 H 1.08999 * 109.46161 * 301.72466 * 18 17 16 30 30 H 1.09004 * 109.46482 * 181.75468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2452 -3.6621 0.0005 13 1 2.8730 -3.6041 0.8897 14 6 1.4803 -4.9885 0.0012 15 6 2.4811 -6.1458 -0.0594 16 6 3.3508 -5.9967 -1.3097 17 7 4.0621 -4.7128 -1.2625 18 6 3.1218 -3.5850 -1.2515 19 1 -0.4850 0.8401 0.0004 20 1 -0.3005 -1.8576 -1.1911 21 1 0.9651 -2.5260 -2.0381 22 1 0.8877 -5.0669 0.9127 23 1 0.8215 -5.0296 -0.8662 24 1 3.1135 -6.1269 0.8282 25 1 1.9413 -7.0919 -0.1017 26 1 4.0740 -6.8112 -1.3484 27 1 2.7193 -6.0296 -2.1975 28 1 4.7144 -4.6324 -2.0282 29 1 2.4913 -3.6291 -2.1395 30 1 3.6786 -2.6479 -1.2478 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260076746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -39.496720 kcal Electronic energy + Delta-G solvation = -11782.150718 eV Core-core repulsion = 9803.200324 eV Total energy + Delta-G solvation = -1978.950394 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76655 -36.38271 -33.66752 -32.51694 -30.55104 -27.88339 -24.85069 -24.48210 -21.87322 -19.95443 -18.42260 -17.47193 -16.62168 -16.27505 -15.29185 -14.90068 -14.69498 -14.49496 -13.89805 -13.85107 -13.42646 -12.94097 -12.75715 -12.70594 -12.04574 -11.86963 -11.73394 -11.41827 -11.03023 -10.80576 -10.57744 -9.27170 -9.10256 -8.07310 -6.31578 1.36524 1.39068 1.48718 2.38443 3.09690 3.43749 4.07714 4.18454 4.21660 4.42832 4.55054 4.66213 4.79456 4.82618 5.01298 5.09526 5.17753 5.22406 5.31796 5.48559 5.63340 5.73074 5.84035 6.17627 6.20293 6.64933 6.73242 7.00741 7.17157 7.44490 8.87155 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063437 B = 0.011873 C = 0.010758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.278027 B = 2357.741211 C = 2602.087562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.052 0.948 9 C 0.216 3.784 10 H -0.005 1.005 11 N -0.838 5.838 12 C -0.061 4.061 13 H 0.042 0.958 14 C -0.105 4.105 15 C -0.114 4.114 16 C 0.060 3.940 17 N -0.698 5.698 18 C 0.084 3.916 19 H 0.264 0.736 20 H 0.339 0.661 21 H 0.314 0.686 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.347 0.653 29 H 0.025 0.975 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -8.235 -3.378 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.070 0.930 9 C 0.105 3.895 10 H 0.013 0.987 11 N -0.366 5.366 12 C -0.081 4.081 13 H 0.061 0.939 14 C -0.143 4.143 15 C -0.151 4.151 16 C -0.069 4.069 17 N -0.330 5.330 18 C -0.045 4.045 19 H 0.073 0.927 20 H 0.152 0.848 21 H 0.124 0.876 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.045 0.955 28 H 0.165 0.835 29 H 0.044 0.956 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.069 -8.874 -2.410 10.500 hybrid contribution 0.186 2.245 -0.853 2.408 sum 5.255 -6.629 -3.264 9.067 Atomic orbital electron populations 1.69862 1.06979 1.27592 1.51546 1.25765 0.95682 1.02352 0.94444 0.85618 0.78634 0.79529 0.78171 1.20054 1.21078 1.19744 1.22284 0.93588 0.93131 1.50898 0.93016 1.18805 0.90004 0.91061 0.89658 0.98651 1.59493 1.18107 1.54836 1.04202 1.21002 0.95480 0.94747 0.96869 0.93948 1.21482 0.97532 0.94162 1.01081 1.21609 0.97179 0.98024 0.98334 1.21946 0.96685 0.91601 0.96669 1.60289 1.19413 1.02203 1.51051 1.21662 0.93371 0.93028 0.96472 0.92663 0.84761 0.87611 0.93902 0.92115 0.92234 0.90086 0.89032 0.95471 0.83464 0.95649 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 11.54 21.45 0.25 -51.87 16 2 C 0.02 0.93 5.38 84.66 0.46 1.38 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.56 -30.47 8.01 25.60 0.21 -30.26 16 8 H 0.05 2.81 6.73 -2.91 -0.02 2.79 16 9 C 0.22 10.97 2.54 44.17 0.11 11.08 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 N -0.84 -40.35 8.33 -171.80 -1.43 -41.78 16 12 C -0.06 -2.62 2.19 -10.74 -0.02 -2.64 16 13 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.10 -3.87 5.16 30.67 0.16 -3.71 16 15 C -0.11 -3.30 6.09 30.65 0.19 -3.11 16 16 C 0.06 1.61 6.55 86.32 0.57 2.17 16 17 N -0.70 -21.52 6.84 -514.04 -3.52 -25.04 16 18 C 0.08 3.19 5.25 86.33 0.45 3.65 16 19 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 20 H 0.34 17.82 7.08 -89.69 -0.63 17.18 16 21 H 0.31 14.39 7.13 -89.70 -0.64 13.75 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 2.33 7.54 -2.39 -0.02 2.31 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.35 8.95 8.90 -89.69 -0.80 8.15 16 29 H 0.03 0.98 6.62 -2.39 -0.02 0.96 16 30 H 0.06 2.41 6.66 -2.38 -0.02 2.39 16 Total: -1.00 -57.67 234.70 -1.49 -59.17 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.93 Total: 35.44 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 2.11 Total: -21.44 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.70 Total: -118.69 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -57.67 -1.49 -59.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.669 kcal (2) G-P(sol) polarization free energy of solvation -57.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds