Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48499 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47063 * 299.99555 * 3 2 1 6 6 H 1.48496 * 109.47281 * 59.99887 * 3 2 1 7 7 C 1.37878 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.46900 * 108.82308 * 299.99566 * 9 7 2 11 11 C 1.54169 * 108.85405 * 181.49138 * 9 7 2 12 12 C 1.53753 * 112.00907 * 197.57631 * 11 9 7 13 13 C 1.50811 * 111.67226 * 319.20360 * 12 11 9 14 14 N 1.47631 * 108.05173 * 94.97152 * 13 12 11 15 15 C 1.39776 * 114.76252 * 277.19738 * 14 13 12 16 16 C 1.50751 * 108.85503 * 58.49728 * 9 7 2 17 17 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 18 18 H 1.00898 * 110.99924 * 294.63274 * 10 9 7 19 19 H 1.00897 * 111.00381 * 58.59435 * 10 9 7 20 20 H 1.08998 * 108.98291 * 318.32182 * 11 9 7 21 21 H 1.09002 * 108.97768 * 77.03508 * 11 9 7 22 22 H 1.08995 * 109.08645 * 198.59505 * 12 11 9 23 23 H 1.08998 * 108.89866 * 79.69119 * 12 11 9 24 24 H 1.09003 * 109.74861 * 335.33431 * 13 12 11 25 25 H 1.09004 * 109.78457 * 214.63446 * 13 12 11 26 26 H 1.00904 * 111.00001 * 150.34156 * 14 13 12 27 27 H 1.09001 * 109.01921 * 301.68883 * 15 14 13 28 28 H 1.09000 * 108.96165 * 182.82767 * 15 14 13 29 29 H 1.08998 * 109.54831 * 333.68613 * 16 9 7 30 30 H 1.08999 * 109.54059 * 93.87244 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4116 -2.5618 1.2044 11 6 2.2650 -3.6599 0.0392 12 6 1.6306 -4.9936 -0.3883 13 6 0.2430 -5.1576 0.1792 14 7 -0.7241 -4.6970 -0.8367 15 6 -0.9313 -3.3150 -0.8637 16 6 0.3623 -2.5486 -1.2162 17 1 -0.4850 0.8400 -0.0004 18 1 0.9779 -2.5944 2.0388 19 1 -0.2342 -1.7872 1.2357 20 1 3.0935 -3.4293 -0.6305 21 1 2.6492 -3.7613 1.0542 22 1 2.2571 -5.8144 -0.0392 23 1 1.5761 -5.0259 -1.4765 24 1 0.1415 -4.5570 1.0832 25 1 0.0612 -6.2068 0.4118 26 1 -1.5993 -5.1923 -0.7536 27 1 -1.2817 -2.9891 0.1156 28 1 -1.6940 -3.0857 -1.6080 29 1 0.1121 -1.5342 -1.5265 30 1 0.8817 -3.0603 -2.0264 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = 7.419922 kcal Electronic energy + Delta-G solvation = -12268.761662 eV Core-core repulsion = 10291.845726 eV Total energy + Delta-G solvation = -1976.915936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.31873 -34.24233 -31.99712 -30.75910 -28.14171 -25.75055 -24.40193 -22.30109 -19.39474 -17.79982 -16.56295 -15.69873 -14.84797 -14.43858 -13.63718 -13.22721 -13.02480 -12.40823 -12.15693 -11.42640 -11.10688 -10.84644 -10.68079 -10.44305 -10.28223 -10.10801 -9.56652 -9.45740 -9.37361 -8.96536 -8.38756 -7.57798 -6.74037 -5.94936 -4.17656 3.22808 3.32137 3.36228 4.36278 5.17605 5.27426 5.85959 6.06211 6.17054 6.32718 6.45403 6.57395 6.78970 6.80931 6.83157 7.01076 7.11467 7.17103 7.25285 7.64351 7.72634 7.83513 8.03091 8.27173 8.35321 8.55744 8.77249 9.04926 9.21927 9.54373 10.93452 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.064323 B = 0.014893 C = 0.013461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.199889 B = 1879.680062 C = 2079.560360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.233 3.767 10 N -0.842 5.842 11 C -0.098 4.098 12 C -0.109 4.109 13 C 0.054 3.946 14 N -0.702 5.702 15 C 0.084 3.916 16 C -0.086 4.086 17 H 0.261 0.739 18 H 0.303 0.697 19 H 0.353 0.647 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.037 0.963 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.038 0.962 26 H 0.321 0.679 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.085 0.915 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -5.292 0.629 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.142 3.858 10 N -0.373 5.373 11 C -0.137 4.137 12 C -0.147 4.147 13 C -0.074 4.074 14 N -0.333 5.333 15 C -0.046 4.046 16 C -0.124 4.124 17 H 0.072 0.928 18 H 0.112 0.888 19 H 0.170 0.830 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.056 0.944 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.454 -5.765 -0.129 5.784 hybrid contribution 0.496 2.044 0.895 2.286 sum 0.043 -3.720 0.766 3.799 Atomic orbital electron populations 1.69726 1.05573 1.26476 1.51063 1.24973 0.94917 0.98973 0.94840 0.86576 0.80187 0.83888 0.77525 1.19994 1.21008 1.21187 1.22136 0.93483 0.91891 1.50446 0.93095 1.18132 0.88877 0.90124 0.88671 1.59886 1.22257 1.51062 1.04080 1.21953 0.98234 0.94512 0.98955 1.21334 0.95795 0.96626 1.00948 1.21879 0.92021 0.97467 0.96026 1.57496 1.14515 1.08327 1.52954 1.20640 0.98056 0.86529 0.99387 1.21415 0.93975 0.99978 0.97068 0.92833 0.88803 0.82969 0.93709 0.94238 0.94452 0.92254 0.89350 0.94368 0.86188 0.93960 0.95032 0.89632 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 9.63 55.43 0.53 -23.11 16 2 C 0.06 1.70 4.91 -17.82 -0.09 1.61 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.54 -14.39 8.05 -34.44 -0.28 -14.67 16 8 H 0.05 1.39 7.68 -52.49 -0.40 0.99 16 9 C 0.23 5.59 0.52 -133.27 -0.07 5.52 16 10 N -0.84 -19.22 4.47 -0.61 0.00 -19.22 16 11 C -0.10 -2.13 4.92 -25.73 -0.13 -2.25 16 12 C -0.11 -2.10 5.41 -27.44 -0.15 -2.25 16 13 C 0.05 1.02 6.22 -4.52 -0.03 0.99 16 14 N -0.70 -13.43 6.07 -118.54 -0.72 -14.15 16 15 C 0.08 1.82 5.93 -6.75 -0.04 1.78 16 16 C -0.09 -2.07 4.64 -27.11 -0.13 -2.20 16 17 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 18 H 0.30 6.74 8.76 -39.29 -0.34 6.40 16 19 H 0.35 8.76 6.16 -39.29 -0.24 8.52 16 20 H 0.04 0.98 7.94 -51.93 -0.41 0.57 16 21 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.20 7.26 -51.93 -0.38 0.82 16 24 H 0.09 1.79 5.25 -51.93 -0.27 1.51 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.32 5.37 8.85 -39.29 -0.35 5.02 16 27 H 0.04 0.98 5.85 -51.93 -0.30 0.67 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 2.31 5.74 -51.93 -0.30 2.01 16 30 H 0.03 0.75 7.11 -51.93 -0.37 0.38 16 LS Contribution 222.84 15.07 3.36 3.36 Total: -1.00 -26.10 222.84 -6.94 -33.03 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -4.18 Total: 15.66 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.90 Total: -11.46 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.19 Total: -56.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -26.10 -6.94 -33.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -26.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds