Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48499 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47063 * 299.99555 * 3 2 1 6 6 H 1.48496 * 109.47281 * 59.99887 * 3 2 1 7 7 C 1.37878 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.46900 * 108.82308 * 299.99566 * 9 7 2 11 11 C 1.54169 * 108.85405 * 181.49138 * 9 7 2 12 12 C 1.53753 * 112.00907 * 197.57631 * 11 9 7 13 13 C 1.50811 * 111.67226 * 319.20360 * 12 11 9 14 14 N 1.47631 * 108.05173 * 94.97152 * 13 12 11 15 15 C 1.39776 * 114.76252 * 277.19738 * 14 13 12 16 16 C 1.50751 * 108.85503 * 58.49728 * 9 7 2 17 17 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 18 18 H 1.00898 * 110.99924 * 294.63274 * 10 9 7 19 19 H 1.00897 * 111.00381 * 58.59435 * 10 9 7 20 20 H 1.08998 * 108.98291 * 318.32182 * 11 9 7 21 21 H 1.09002 * 108.97768 * 77.03508 * 11 9 7 22 22 H 1.08995 * 109.08645 * 198.59505 * 12 11 9 23 23 H 1.08998 * 108.89866 * 79.69119 * 12 11 9 24 24 H 1.09003 * 109.74861 * 335.33431 * 13 12 11 25 25 H 1.09004 * 109.78457 * 214.63446 * 13 12 11 26 26 H 1.00904 * 111.00001 * 150.34156 * 14 13 12 27 27 H 1.09001 * 109.01921 * 301.68883 * 15 14 13 28 28 H 1.09000 * 108.96165 * 182.82767 * 15 14 13 29 29 H 1.08998 * 109.54831 * 333.68613 * 16 9 7 30 30 H 1.08999 * 109.54059 * 93.87244 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4116 -2.5618 1.2044 11 6 2.2650 -3.6599 0.0392 12 6 1.6306 -4.9936 -0.3883 13 6 0.2430 -5.1576 0.1792 14 7 -0.7241 -4.6970 -0.8367 15 6 -0.9313 -3.3150 -0.8637 16 6 0.3623 -2.5486 -1.2162 17 1 -0.4850 0.8400 -0.0004 18 1 0.9779 -2.5944 2.0388 19 1 -0.2342 -1.7872 1.2357 20 1 3.0935 -3.4293 -0.6305 21 1 2.6492 -3.7613 1.0542 22 1 2.2571 -5.8144 -0.0392 23 1 1.5761 -5.0259 -1.4765 24 1 0.1415 -4.5570 1.0832 25 1 0.0612 -6.2068 0.4118 26 1 -1.5993 -5.1923 -0.7536 27 1 -1.2817 -2.9891 0.1156 28 1 -1.6940 -3.0857 -1.6080 29 1 0.1121 -1.5342 -1.5265 30 1 0.8817 -3.0603 -2.0264 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = -10.973392 kcal Electronic energy + Delta-G solvation = -12269.559256 eV Core-core repulsion = 10291.845726 eV Total energy + Delta-G solvation = -1977.713530 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.05912 -36.03250 -33.78546 -32.57594 -29.95991 -27.69541 -26.11347 -24.09309 -21.02087 -19.67165 -18.46521 -17.45265 -16.64063 -16.32629 -15.33344 -14.98777 -14.81547 -14.17183 -13.78346 -13.19158 -13.00115 -12.74839 -12.60604 -12.25955 -12.16630 -11.80846 -11.28123 -11.20460 -11.13041 -10.82000 -10.38864 -9.31124 -8.53557 -7.92028 -6.25603 1.34660 1.39669 1.48137 2.39971 3.12840 3.73913 4.33668 4.40606 4.49223 4.60728 4.74702 4.82566 4.99908 5.14801 5.22196 5.27301 5.38793 5.48770 5.62582 5.70033 5.81181 5.96091 6.10565 6.30494 6.74644 6.78382 7.01509 7.12400 7.25536 7.51127 8.88920 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.064323 B = 0.014893 C = 0.013461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.199889 B = 1879.680062 C = 2079.560360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.563 4.563 8 H 0.036 0.964 9 C 0.228 3.772 10 N -0.826 5.826 11 C -0.096 4.096 12 C -0.103 4.103 13 C 0.055 3.945 14 N -0.702 5.702 15 C 0.099 3.901 16 C -0.081 4.081 17 H 0.262 0.738 18 H 0.306 0.694 19 H 0.341 0.659 20 H 0.032 0.968 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.340 0.660 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -6.198 0.937 6.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.603 4.603 8 H 0.054 0.946 9 C 0.137 3.863 10 N -0.355 5.355 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.074 4.074 14 N -0.334 5.334 15 C -0.032 4.032 16 C -0.120 4.120 17 H 0.072 0.928 18 H 0.115 0.885 19 H 0.157 0.843 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.561 -6.692 0.183 6.718 hybrid contribution 0.537 2.320 0.787 2.508 sum -0.024 -4.372 0.970 4.478 Atomic orbital electron populations 1.69815 1.06210 1.26973 1.50820 1.25518 0.95678 1.01344 0.94636 0.85728 0.78846 0.80783 0.77448 1.20359 1.20943 1.20710 1.22394 0.92998 0.93661 1.51213 0.94590 1.18176 0.89162 0.90108 0.88893 1.59903 1.21653 1.50100 1.03855 1.21897 0.97394 0.95142 0.99034 1.21292 0.96665 0.95902 1.00282 1.21889 0.91374 0.99095 0.95003 1.57391 1.15799 1.06927 1.53250 1.20375 0.96449 0.87754 0.98604 1.21272 0.95342 0.98487 0.96928 0.92815 0.88503 0.84261 0.94878 0.93807 0.91685 0.93302 0.90701 0.91153 0.84107 0.95328 0.94721 0.92791 0.95882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.89 9.63 21.45 0.21 -47.68 16 2 C 0.03 1.50 4.91 84.66 0.42 1.92 16 3 Si 0.94 42.99 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.56 -30.20 8.05 25.60 0.21 -29.99 16 8 H 0.04 1.99 7.68 -2.91 -0.02 1.96 16 9 C 0.23 10.89 0.52 2.45 0.00 10.89 16 10 N -0.83 -37.21 4.47 -155.85 -0.70 -37.90 16 11 C -0.10 -4.08 4.92 31.24 0.15 -3.92 16 12 C -0.10 -3.73 5.41 30.14 0.16 -3.56 16 13 C 0.05 1.88 6.22 85.45 0.53 2.41 16 14 N -0.70 -25.15 6.07 -528.96 -3.21 -28.36 16 15 C 0.10 4.18 5.93 88.07 0.52 4.71 16 16 C -0.08 -3.94 4.64 30.35 0.14 -3.80 16 17 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 18 H 0.31 13.38 8.76 -89.70 -0.79 12.59 16 19 H 0.34 16.90 6.16 -89.70 -0.55 16.34 16 20 H 0.03 1.44 7.94 -2.39 -0.02 1.42 16 21 H 0.04 1.78 7.89 -2.39 -0.02 1.76 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 1.87 7.26 -2.39 -0.02 1.85 16 24 H 0.08 2.84 5.25 -2.39 -0.01 2.83 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.34 10.31 8.85 -89.69 -0.79 9.52 16 27 H 0.03 1.30 5.85 -2.39 -0.01 1.28 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 2.95 5.74 -2.39 -0.01 2.93 16 30 H 0.02 1.11 7.11 -2.39 -0.02 1.09 16 Total: -1.00 -54.09 222.84 -0.51 -54.61 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.97 Total: 35.68 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 2.13 Total: -21.36 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -3.70 Total: -113.95 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -54.09 -0.51 -54.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.633 kcal (2) G-P(sol) polarization free energy of solvation -54.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds