Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00593 * 2 1 4 4 C 1.53000 * 109.47430 * 178.10730 * 3 2 1 5 5 C 1.50696 * 109.46988 * 58.10577 * 3 2 1 6 6 H 1.08006 * 120.00239 * 240.00231 * 5 3 2 7 7 C 1.37876 * 120.00007 * 60.00227 * 5 3 2 8 8 N 1.31513 * 120.00317 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00044 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47267 * 59.99711 * 9 7 5 11 11 H 1.48499 * 109.46906 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46839 * 299.99705 * 9 7 5 13 13 C 1.52997 * 109.46943 * 298.10755 * 3 2 1 14 14 C 1.53785 * 113.61559 * 277.56378 * 13 3 2 15 15 C 1.53784 * 87.08242 * 220.02049 * 14 13 3 16 16 C 1.53781 * 113.61346 * 180.02562 * 13 3 2 17 17 H 1.09006 * 109.46725 * 299.82356 * 1 2 3 18 18 H 1.09004 * 109.47125 * 59.81959 * 1 2 3 19 19 H 1.09004 * 109.47494 * 179.82277 * 1 2 3 20 20 H 1.08994 * 109.47101 * 173.01706 * 4 3 2 21 21 H 1.09005 * 109.47072 * 293.01812 * 4 3 2 22 22 H 1.09000 * 109.47368 * 53.01394 * 4 3 2 23 23 H 0.96999 * 120.00236 * 180.02562 * 8 7 5 24 24 H 1.09005 * 112.85218 * 48.87036 * 13 3 2 25 25 H 1.09003 * 113.61049 * 334.56422 * 14 13 3 26 26 H 1.08994 * 113.61742 * 105.46890 * 14 13 3 27 27 H 1.08995 * 113.61225 * 270.88418 * 15 14 13 28 28 H 1.08996 * 113.61649 * 139.97433 * 15 14 13 29 29 H 1.08997 * 113.61644 * 254.52884 * 16 13 3 30 30 H 1.08994 * 113.61637 * 25.34763 * 16 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5348 1.1848 0.0476 5 6 1.5289 2.0696 1.2063 6 1 0.9827 2.9926 1.0783 7 6 1.7857 1.5906 2.4734 8 7 2.4512 0.4671 2.6294 9 14 1.1883 2.5376 3.9688 10 1 -0.2913 2.6541 3.9223 11 1 1.5902 1.8175 5.2037 12 1 1.7919 3.8944 3.9690 13 6 1.5970 2.0477 -1.2724 14 6 2.4583 1.6974 -2.4973 15 6 2.4003 3.1892 -2.8663 16 6 2.1736 3.4699 -1.3707 17 1 -0.3633 0.5111 0.8916 18 1 -0.3633 0.5166 -0.8884 19 1 -0.3634 -1.0277 -0.0032 20 1 3.9813 2.1712 -0.0771 21 1 3.8365 0.7683 1.0087 22 1 3.8727 0.5289 -0.7547 23 1 2.6315 0.1300 3.5209 24 1 0.5247 1.9977 -1.4622 25 1 3.4592 1.3494 -2.2421 26 1 1.9542 1.0502 -3.2149 27 1 1.5481 3.4511 -3.4932 28 1 3.3433 3.5820 -3.2465 29 1 1.4398 4.2528 -1.1794 30 1 3.0958 3.6071 -0.8062 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260214603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = -26.503761 kcal Electronic energy + Delta-G solvation = -12130.466650 eV Core-core repulsion = 10119.786921 eV Total energy + Delta-G solvation = -2010.679728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.77084 -35.61263 -32.47704 -29.59053 -25.94951 -24.92735 -24.43143 -24.26989 -20.30691 -17.78157 -16.37678 -15.46553 -14.84597 -14.19302 -13.71676 -13.46073 -12.56410 -12.37114 -12.00242 -11.45796 -11.20345 -10.89182 -10.69034 -10.66180 -10.31994 -10.21437 -10.03613 -9.81848 -9.47845 -9.21680 -8.55066 -8.39696 -7.65689 -5.89961 -4.08785 3.31120 3.36617 3.38855 4.42717 5.21333 5.42026 5.46860 5.54977 5.60765 6.00731 6.18005 6.32385 6.52305 6.52852 6.54754 6.69577 6.72778 6.79311 6.99651 7.02519 7.08537 7.22680 7.28753 7.60824 7.82457 8.15890 8.38594 8.88653 9.18511 9.63864 11.08898 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.046065 B = 0.015999 C = 0.014472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.695847 B = 1749.741135 C = 1934.276882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.379 6.379 3 C 0.244 3.756 4 C -0.126 4.126 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.079 3.921 8 N -0.859 5.859 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.124 4.124 14 C -0.140 4.140 15 C -0.149 4.149 16 C -0.119 4.119 17 H 0.041 0.959 18 H 0.011 0.989 19 H 0.048 0.952 20 H 0.039 0.961 21 H 0.088 0.912 22 H 0.020 0.980 23 H 0.259 0.741 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 2.731 -5.762 6.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.298 6.298 3 C 0.207 3.793 4 C -0.183 4.183 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.126 4.126 8 N -0.495 5.495 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.143 4.143 14 C -0.177 4.177 15 C -0.186 4.186 16 C -0.156 4.156 17 H 0.060 0.940 18 H 0.030 0.970 19 H 0.066 0.934 20 H 0.057 0.943 21 H 0.106 0.894 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.526 2.428 -5.625 6.149 hybrid contribution -0.666 0.791 0.878 1.356 sum -1.192 3.219 -4.746 5.857 Atomic orbital electron populations 1.22164 0.84985 0.98507 0.98701 1.87838 1.16661 1.30758 1.94511 1.18916 0.90782 0.80312 0.89339 1.21723 0.95834 0.98411 1.02327 1.21425 1.37326 1.08676 0.90895 0.92803 1.24985 0.94419 0.94510 0.98663 1.69976 1.38196 1.19280 1.22069 0.86831 0.79323 0.80230 0.82584 1.20327 1.21288 1.20242 1.23081 0.98151 0.96143 0.96895 1.23051 1.01489 0.94967 0.98240 1.22896 1.00298 0.97930 0.97518 1.22783 1.01245 0.97221 0.94398 0.94013 0.97050 0.93372 0.94258 0.89354 0.96122 0.93104 0.90943 0.89638 0.93134 0.91479 0.92648 0.92932 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 10.37 101.05 1.05 2.28 16 2 O -0.38 -9.99 9.74 -35.23 -0.34 -10.33 16 3 C 0.24 6.10 0.40 -91.78 -0.04 6.06 16 4 C -0.13 -3.07 7.57 37.16 0.28 -2.79 16 5 C -0.55 -14.67 6.24 -34.44 -0.21 -14.88 16 6 H 0.05 1.45 7.54 -52.48 -0.40 1.05 16 7 C 0.08 2.17 5.22 -17.82 -0.09 2.07 16 8 N -0.86 -24.50 10.84 55.43 0.60 -23.90 16 9 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.12 -2.65 2.97 -89.81 -0.27 -2.91 16 14 C -0.14 -2.61 7.33 -25.91 -0.19 -2.80 16 15 C -0.15 -2.45 8.08 -25.88 -0.21 -2.66 16 16 C -0.12 -2.28 6.77 -25.88 -0.18 -2.45 16 17 H 0.04 1.02 7.11 -51.93 -0.37 0.65 16 18 H 0.01 0.23 6.29 -51.93 -0.33 -0.09 16 19 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 20 H 0.04 0.89 6.23 -51.93 -0.32 0.56 16 21 H 0.09 2.40 5.91 -51.93 -0.31 2.09 16 22 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.07 1.56 6.33 -51.93 -0.33 1.23 16 25 H 0.09 1.62 5.62 -51.93 -0.29 1.33 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.67 6.31 -51.93 -0.33 1.34 16 LS Contribution 233.32 15.07 3.52 3.52 Total: -1.00 -28.54 233.32 -5.36 -33.90 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.26 Total: -1.17 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 0.14 Total: -18.08 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.60 Total: -23.90 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.34 Total: -10.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.54 -5.36 -33.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.398 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds