Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46842 * 111.00036 * 2 1 4 4 C 1.53042 * 109.52345 * 185.83962 * 3 2 1 5 5 C 1.53113 * 109.27417 * 300.81707 * 4 3 2 6 6 C 1.53122 * 109.16249 * 57.65691 * 5 4 3 7 7 H 1.09001 * 109.50471 * 62.28404 * 6 5 4 8 8 N 1.46898 * 109.50299 * 182.36253 * 6 5 4 9 9 C 1.46847 * 110.99416 * 124.20687 * 2 1 3 10 10 H 1.08997 * 109.46285 * 294.17193 * 9 2 1 11 11 C 1.50693 * 109.46410 * 54.14764 * 9 2 1 12 12 H 1.08005 * 120.00532 * 54.94192 * 11 9 2 13 13 C 1.37880 * 120.00082 * 234.93509 * 11 9 2 14 14 N 1.31518 * 119.99647 * 5.62190 * 13 11 9 15 15 Si 1.86795 * 120.00205 * 185.61451 * 13 11 9 16 16 H 1.48501 * 109.47191 * 90.00468 * 15 13 11 17 17 H 1.48498 * 109.47453 * 210.00263 * 15 13 11 18 18 H 1.48501 * 109.47343 * 330.00607 * 15 13 11 19 19 H 1.09004 * 109.47182 * 54.99871 * 1 2 3 20 20 H 1.09001 * 109.47532 * 174.99621 * 1 2 3 21 21 H 1.09000 * 109.47276 * 295.00007 * 1 2 3 22 22 H 1.08996 * 109.46623 * 65.81604 * 3 2 1 23 23 H 1.09006 * 109.45187 * 305.84914 * 3 2 1 24 24 H 1.08997 * 109.50305 * 180.87780 * 4 3 2 25 25 H 1.08998 * 109.53610 * 60.77882 * 4 3 2 26 26 H 1.09001 * 109.52427 * 297.74963 * 5 4 3 27 27 H 1.09006 * 109.57544 * 177.59133 * 5 4 3 28 28 H 1.00901 * 111.00214 * 299.92029 * 8 6 5 29 29 H 1.00905 * 111.00192 * 63.87917 * 8 6 5 30 30 H 0.96994 * 119.99774 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1187 0.5370 1.0144 6 6 3.5181 -0.8715 1.0209 7 1 3.7813 -1.3837 0.0955 8 7 4.0468 -1.6248 2.1659 9 6 1.9951 -0.7707 1.1338 10 1 1.7324 -0.2707 2.0660 11 6 1.3981 -2.1543 1.1207 12 1 1.4841 -2.7713 0.2384 13 6 0.7421 -2.6327 2.2351 14 7 0.5405 -1.8444 3.2683 15 14 0.1396 -4.4003 2.2772 16 1 1.2038 -5.2728 2.8355 17 1 -1.0723 -4.4901 3.1307 18 1 -0.1915 -4.8435 0.8991 19 1 -0.3634 0.5895 -0.8418 20 1 -0.3634 -1.0237 -0.0896 21 1 -0.3634 0.4343 0.9314 22 1 1.7324 1.8609 0.9375 23 1 1.5634 1.9255 -0.8331 24 1 3.9099 2.3511 -0.1311 25 1 3.7820 0.8571 -1.0906 26 1 3.8886 1.0355 1.9560 27 1 5.1999 0.4713 0.8917 28 1 5.0514 -1.7032 2.1143 29 1 3.7610 -1.2052 3.0379 30 1 0.0787 -2.1808 4.0521 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260363304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -1.919711 kcal Electronic energy + Delta-G solvation = -12026.936107 eV Core-core repulsion = 10049.615174 eV Total energy + Delta-G solvation = -1977.320933 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.16162 -33.66475 -32.83691 -30.93755 -27.61376 -25.74315 -24.49593 -21.12377 -21.06874 -18.77761 -16.40929 -14.97254 -14.78617 -14.38072 -13.67157 -13.37374 -12.91948 -12.70347 -12.25178 -12.05864 -11.36836 -11.14072 -10.82730 -10.67098 -10.48478 -10.30213 -10.10336 -9.79799 -9.30904 -8.91078 -8.36863 -7.48982 -6.99649 -5.89528 -3.88398 3.40765 3.46706 3.50260 4.54350 5.02445 5.40950 5.51018 5.60430 5.71288 6.04139 6.12142 6.23002 6.30267 6.42503 6.47519 6.55427 6.62660 6.80999 6.94607 7.03247 7.26172 7.69341 7.98263 8.03555 8.28252 8.50205 8.53044 8.76401 9.20930 9.73865 11.18694 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.016189 C = 0.013437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.447904 B = 1729.205647 C = 2083.306261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.545 5.545 3 C 0.052 3.948 4 C -0.106 4.106 5 C -0.158 4.158 6 C 0.108 3.892 7 H 0.066 0.934 8 N -0.820 5.820 9 C 0.201 3.799 10 H 0.041 0.959 11 C -0.473 4.473 12 H 0.053 0.947 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.276 1.276 19 H 0.033 0.967 20 H 0.076 0.924 21 H 0.013 0.987 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.315 0.685 29 H 0.336 0.664 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 4.627 -3.300 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.271 5.271 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.198 4.198 6 C -0.005 4.005 7 H 0.084 0.916 8 N -0.346 5.346 9 C 0.095 3.905 10 H 0.059 0.941 11 C -0.512 4.512 12 H 0.072 0.928 13 C -0.129 4.129 14 N -0.539 5.539 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.201 1.201 19 H 0.052 0.948 20 H 0.095 0.905 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.488 3.767 -3.817 6.397 hybrid contribution -0.030 0.425 1.143 1.220 sum 3.458 4.192 -2.674 6.056 Atomic orbital electron populations 1.21934 0.88209 1.02122 0.97262 1.62217 1.07328 1.09843 1.47665 1.22009 0.94718 0.92302 0.98604 1.21427 0.95600 0.98478 0.98963 1.22617 0.98751 1.00261 0.98181 1.21541 0.97576 0.87930 0.93420 0.91559 1.58570 1.12915 1.58194 1.04895 1.19459 0.88668 0.93929 0.88421 0.94090 1.20720 1.33430 0.98138 0.98923 0.92840 1.24854 0.95289 0.97054 0.95729 1.69889 1.43042 1.35088 1.05858 0.86611 0.77798 0.85809 0.77719 1.20647 1.21809 1.20108 0.94773 0.90513 0.96832 0.96448 0.92695 0.93178 0.91780 0.93225 0.93707 0.87421 0.85151 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.17 9.21 60.07 0.55 1.73 16 2 N -0.54 -12.37 4.74 -236.32 -1.12 -13.49 16 3 C 0.05 1.01 5.46 -3.83 -0.02 0.99 16 4 C -0.11 -1.83 6.09 -26.65 -0.16 -1.99 16 5 C -0.16 -2.89 5.57 -26.61 -0.15 -3.04 16 6 C 0.11 2.35 2.83 -67.63 -0.19 2.16 16 7 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 8 N -0.82 -17.29 8.86 -4.59 -0.04 -17.33 16 9 C 0.20 5.00 1.81 -68.87 -0.12 4.88 16 10 H 0.04 1.16 6.92 -51.93 -0.36 0.80 16 11 C -0.47 -12.99 6.44 -34.44 -0.22 -13.21 16 12 H 0.05 1.53 7.82 -52.48 -0.41 1.12 16 13 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 14 N -0.90 -25.75 12.62 55.43 0.70 -25.05 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 20 H 0.08 1.82 6.96 -51.93 -0.36 1.46 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.32 5.57 9.04 -39.29 -0.36 5.22 16 29 H 0.34 7.28 8.98 -39.29 -0.35 6.93 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 241.14 15.07 3.63 3.63 Total: -1.00 -28.68 241.14 -7.03 -35.71 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.77 Total: 6.20 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.41 Total: -6.58 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.46 Total: -55.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.68 -7.03 -35.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.792 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds