Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46842 * 111.00036 * 2 1 4 4 C 1.53042 * 109.52345 * 185.83962 * 3 2 1 5 5 C 1.53113 * 109.27417 * 300.81707 * 4 3 2 6 6 C 1.53122 * 109.16249 * 57.65691 * 5 4 3 7 7 H 1.09001 * 109.50471 * 62.28404 * 6 5 4 8 8 N 1.46898 * 109.50299 * 182.36253 * 6 5 4 9 9 C 1.46847 * 110.99416 * 124.20687 * 2 1 3 10 10 H 1.08997 * 109.46285 * 294.17193 * 9 2 1 11 11 C 1.50693 * 109.46410 * 54.14764 * 9 2 1 12 12 H 1.08005 * 120.00532 * 54.94192 * 11 9 2 13 13 C 1.37880 * 120.00082 * 234.93509 * 11 9 2 14 14 N 1.31518 * 119.99647 * 5.62190 * 13 11 9 15 15 Si 1.86795 * 120.00205 * 185.61451 * 13 11 9 16 16 H 1.48501 * 109.47191 * 90.00468 * 15 13 11 17 17 H 1.48498 * 109.47453 * 210.00263 * 15 13 11 18 18 H 1.48501 * 109.47343 * 330.00607 * 15 13 11 19 19 H 1.09004 * 109.47182 * 54.99871 * 1 2 3 20 20 H 1.09001 * 109.47532 * 174.99621 * 1 2 3 21 21 H 1.09000 * 109.47276 * 295.00007 * 1 2 3 22 22 H 1.08996 * 109.46623 * 65.81604 * 3 2 1 23 23 H 1.09006 * 109.45187 * 305.84914 * 3 2 1 24 24 H 1.08997 * 109.50305 * 180.87780 * 4 3 2 25 25 H 1.08998 * 109.53610 * 60.77882 * 4 3 2 26 26 H 1.09001 * 109.52427 * 297.74963 * 5 4 3 27 27 H 1.09006 * 109.57544 * 177.59133 * 5 4 3 28 28 H 1.00901 * 111.00214 * 299.92029 * 8 6 5 29 29 H 1.00905 * 111.00192 * 63.87917 * 8 6 5 30 30 H 0.96994 * 119.99774 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1187 0.5370 1.0144 6 6 3.5181 -0.8715 1.0209 7 1 3.7813 -1.3837 0.0955 8 7 4.0468 -1.6248 2.1659 9 6 1.9951 -0.7707 1.1338 10 1 1.7324 -0.2707 2.0660 11 6 1.3981 -2.1543 1.1207 12 1 1.4841 -2.7713 0.2384 13 6 0.7421 -2.6327 2.2351 14 7 0.5405 -1.8444 3.2683 15 14 0.1396 -4.4003 2.2772 16 1 1.2038 -5.2728 2.8355 17 1 -1.0723 -4.4901 3.1307 18 1 -0.1915 -4.8435 0.8991 19 1 -0.3634 0.5895 -0.8418 20 1 -0.3634 -1.0237 -0.0896 21 1 -0.3634 0.4343 0.9314 22 1 1.7324 1.8609 0.9375 23 1 1.5634 1.9255 -0.8331 24 1 3.9099 2.3511 -0.1311 25 1 3.7820 0.8571 -1.0906 26 1 3.8886 1.0355 1.9560 27 1 5.1999 0.4713 0.8917 28 1 5.0514 -1.7032 2.1143 29 1 3.7610 -1.2052 3.0379 30 1 0.0787 -2.1808 4.0521 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260363304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -23.696445 kcal Electronic energy + Delta-G solvation = -12027.880417 eV Core-core repulsion = 10049.615174 eV Total energy + Delta-G solvation = -1978.265243 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.86536 -35.36974 -34.79494 -32.66649 -29.47785 -27.41736 -26.45198 -22.87766 -22.71092 -20.47665 -18.46789 -16.75982 -16.65464 -16.08868 -15.35766 -15.13123 -14.59079 -14.38217 -13.95488 -13.90067 -13.12397 -12.82907 -12.79867 -12.49595 -12.28196 -12.04687 -11.63394 -11.52857 -11.24317 -10.85229 -10.46726 -9.14474 -8.83871 -8.00955 -6.05414 1.42969 1.46006 1.53395 2.50116 3.17752 3.53645 3.98958 4.13321 4.18495 4.44107 4.50511 4.66657 4.75666 4.86497 4.89063 5.03055 5.08943 5.18943 5.23709 5.36868 5.43130 5.70978 5.84035 6.18112 6.45835 6.65306 6.86690 6.98350 7.10217 7.59330 9.05681 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.016189 C = 0.013437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.447904 B = 1729.205647 C = 2083.306261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.553 5.553 3 C 0.049 3.951 4 C -0.102 4.102 5 C -0.150 4.150 6 C 0.111 3.889 7 H 0.055 0.945 8 N -0.833 5.833 9 C 0.205 3.795 10 H 0.003 0.997 11 C -0.480 4.480 12 H 0.037 0.963 13 C 0.031 3.969 14 N -0.925 5.925 15 Si 0.944 3.056 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.273 1.273 19 H 0.070 0.930 20 H 0.052 0.948 21 H -0.008 1.008 22 H 0.005 0.995 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.336 0.664 29 H 0.331 0.669 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 5.250 -4.292 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.278 5.278 3 C -0.079 4.079 4 C -0.140 4.140 5 C -0.189 4.189 6 C -0.002 4.002 7 H 0.073 0.927 8 N -0.361 5.361 9 C 0.099 3.901 10 H 0.020 0.980 11 C -0.519 4.519 12 H 0.055 0.945 13 C -0.168 4.168 14 N -0.566 5.566 15 Si 0.772 3.228 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.198 1.198 19 H 0.088 0.912 20 H 0.071 0.929 21 H 0.010 0.990 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.431 4.394 -4.829 7.890 hybrid contribution -0.317 0.262 1.407 1.466 sum 4.114 4.656 -3.421 7.093 Atomic orbital electron populations 1.21877 0.88319 1.01093 0.97639 1.62184 1.07421 1.12049 1.46171 1.22169 0.96561 0.90214 0.99006 1.21449 0.93709 1.00367 0.98498 1.22479 1.00274 0.97693 0.98485 1.21361 0.95582 0.90261 0.92988 0.92687 1.58474 1.14611 1.58525 1.04446 1.19304 0.90821 0.92519 0.87471 0.97959 1.20867 1.33453 0.99342 0.98231 0.94497 1.25426 0.95697 1.00101 0.95560 1.70005 1.43974 1.36339 1.06257 0.85782 0.77328 0.82022 0.77701 1.20616 1.21432 1.19760 0.91155 0.92884 0.98976 0.97697 0.90110 0.89718 0.91216 0.93979 0.90879 0.85174 0.85687 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.61 9.21 127.69 1.18 3.78 16 2 N -0.55 -24.68 4.74 -901.58 -4.27 -28.95 16 3 C 0.05 1.77 5.46 86.33 0.47 2.25 16 4 C -0.10 -3.16 6.09 30.65 0.19 -2.97 16 5 C -0.15 -5.09 5.57 30.67 0.17 -4.92 16 6 C 0.11 4.72 2.83 44.97 0.13 4.85 16 7 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 8 N -0.83 -34.61 8.86 -168.45 -1.49 -36.11 16 9 C 0.21 10.29 1.81 44.19 0.08 10.37 16 10 H 0.00 0.15 6.92 -2.39 -0.02 0.13 16 11 C -0.48 -26.69 6.44 25.60 0.16 -26.53 16 12 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 13 C 0.03 1.72 5.45 84.65 0.46 2.18 16 14 N -0.92 -53.99 12.62 21.45 0.27 -53.72 16 15 Si 0.94 45.36 29.54 68.60 2.03 47.39 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 H 0.07 2.53 8.08 -2.38 -0.02 2.51 16 20 H 0.05 2.54 6.96 -2.39 -0.02 2.53 16 21 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 22 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 23 H 0.08 2.53 8.08 -2.38 -0.02 2.51 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.34 11.35 9.04 -89.69 -0.81 10.54 16 29 H 0.33 14.37 8.98 -89.69 -0.81 13.57 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -61.46 241.14 -1.13 -62.58 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.50 Total: 19.80 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 2.84 Total: -10.99 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.49 Total: -118.78 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -61.46 -1.13 -62.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.886 kcal (2) G-P(sol) polarization free energy of solvation -61.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds