Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 111.00136 * 2 1 4 4 C 1.53038 * 109.51963 * 185.83783 * 3 2 1 5 5 C 1.53110 * 109.28016 * 300.82345 * 4 3 2 6 6 C 1.53123 * 109.16391 * 57.65510 * 5 4 3 7 7 H 1.08996 * 109.50384 * 182.35948 * 6 5 4 8 8 N 1.46902 * 109.49794 * 62.28453 * 6 5 4 9 9 C 1.46921 * 110.98564 * 124.23401 * 2 1 3 10 10 H 1.08999 * 109.45190 * 294.16193 * 9 2 1 11 11 C 1.50706 * 109.52037 * 54.15356 * 9 2 1 12 12 H 1.08002 * 119.99677 * 35.18865 * 11 9 2 13 13 C 1.37869 * 120.00154 * 215.19353 * 11 9 2 14 14 N 1.31516 * 120.00545 * 5.53976 * 13 11 9 15 15 Si 1.86805 * 120.00023 * 185.54470 * 13 11 9 16 16 H 1.48503 * 109.47175 * 59.99392 * 15 13 11 17 17 H 1.48497 * 109.47218 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46710 * 299.99603 * 15 13 11 19 19 H 1.09001 * 109.46976 * 53.89040 * 1 2 3 20 20 H 1.08998 * 109.47719 * 173.89136 * 1 2 3 21 21 H 1.09005 * 109.47341 * 293.89616 * 1 2 3 22 22 H 1.09006 * 109.45866 * 65.82859 * 3 2 1 23 23 H 1.08995 * 109.45651 * 305.85462 * 3 2 1 24 24 H 1.09000 * 109.49715 * 180.88367 * 4 3 2 25 25 H 1.08999 * 109.53630 * 60.79069 * 4 3 2 26 26 H 1.09003 * 109.52461 * 297.75085 * 5 4 3 27 27 H 1.09005 * 109.52402 * 177.56308 * 5 4 3 28 28 H 1.00902 * 111.00239 * 60.07911 * 8 6 5 29 29 H 1.00901 * 110.99619 * 184.03363 * 8 6 5 30 30 H 0.96994 * 120.00561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1188 0.5368 1.0143 6 6 3.5180 -0.8717 1.0208 7 1 3.9104 -1.4307 1.8702 8 7 3.8728 -1.5618 -0.2266 9 6 1.9952 -0.7717 1.1341 10 1 1.7324 -0.2719 2.0664 11 6 1.3989 -2.1557 1.1214 12 1 1.1955 -2.6474 0.1815 13 6 1.1129 -2.7941 2.3094 14 7 1.2577 -2.1561 3.4503 15 14 0.5199 -4.5655 2.2987 16 1 1.5498 -5.4285 1.6664 17 1 0.2846 -5.0172 3.6936 18 1 -0.7457 -4.6590 1.5276 19 1 -0.3633 0.6056 -0.8303 20 1 -0.3634 -1.0218 -0.1094 21 1 -0.3634 0.4163 0.9396 22 1 1.7325 1.8608 0.9377 23 1 1.5634 1.9256 -0.8330 24 1 3.9099 2.3511 -0.1309 25 1 3.7820 0.8571 -1.0907 26 1 3.8887 1.0352 1.9560 27 1 5.1998 0.4712 0.8905 28 1 4.8740 -1.6390 -0.3250 29 1 3.4336 -2.4689 -0.2754 30 1 1.0569 -2.6054 4.2862 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260363308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -3.759215 kcal Electronic energy + Delta-G solvation = -12061.996424 eV Core-core repulsion = 10084.595724 eV Total energy + Delta-G solvation = -1977.400699 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.10318 -33.36001 -32.90487 -30.88815 -27.63758 -25.83447 -24.64297 -21.37986 -21.01080 -18.07123 -16.33322 -15.09196 -14.60454 -14.37204 -13.86093 -13.41874 -13.21508 -12.41538 -12.02758 -11.89933 -11.32669 -11.07607 -10.89407 -10.83076 -10.45524 -10.30576 -10.06114 -9.73277 -9.53987 -8.76321 -8.51398 -7.41525 -6.87967 -6.05743 -4.09419 3.28710 3.33989 3.36649 4.37953 5.14301 5.31735 5.64670 5.75437 5.91672 5.93864 6.30739 6.35329 6.46018 6.52572 6.59564 6.67013 6.71520 6.98598 7.00255 7.11985 7.31867 7.57718 7.84658 8.08239 8.28783 8.45976 8.65654 8.77853 9.08877 9.56683 11.01511 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048621 B = 0.015420 C = 0.013869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.744024 B = 1815.442278 C = 2018.381656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.525 5.525 3 C 0.058 3.942 4 C -0.101 4.101 5 C -0.116 4.116 6 C 0.108 3.892 7 H 0.025 0.975 8 N -0.825 5.825 9 C 0.211 3.789 10 H 0.031 0.969 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.276 1.276 19 H 0.036 0.964 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.012 0.988 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.308 0.692 29 H 0.346 0.654 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 3.266 -4.006 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.250 5.250 3 C -0.070 4.070 4 C -0.139 4.139 5 C -0.154 4.154 6 C -0.004 4.004 7 H 0.043 0.957 8 N -0.354 5.354 9 C 0.104 3.896 10 H 0.049 0.951 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.202 1.202 19 H 0.055 0.945 20 H 0.091 0.909 21 H 0.026 0.974 22 H 0.030 0.970 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.160 0.840 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.512 3.623 -4.578 6.355 hybrid contribution -0.151 -1.264 1.630 2.068 sum 2.361 2.359 -2.947 4.453 Atomic orbital electron populations 1.22045 0.89141 1.01754 0.97198 1.61982 1.05979 1.10056 1.46959 1.21959 0.95371 0.91668 0.98045 1.21369 0.94937 0.97521 1.00036 1.21672 0.98270 0.97581 0.97865 1.21412 0.98100 0.91442 0.89482 0.95707 1.58682 1.10953 1.26946 1.38823 1.19403 0.89206 0.93357 0.87635 0.95089 1.21000 1.41173 0.99681 0.92241 0.91859 1.25044 0.95198 0.98175 0.95725 1.69928 1.49281 1.36593 0.97560 0.86627 0.79377 0.84980 0.76818 1.20206 1.21506 1.20171 0.94541 0.90861 0.97436 0.97009 0.92905 0.93977 0.90522 0.93057 0.93811 0.88243 0.83997 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.19 60.06 0.55 1.58 16 2 N -0.52 -11.97 4.59 -236.26 -1.09 -13.06 16 3 C 0.06 1.16 5.47 -3.83 -0.02 1.14 16 4 C -0.10 -1.85 5.93 -26.65 -0.16 -2.01 16 5 C -0.12 -2.26 5.67 -26.61 -0.15 -2.41 16 6 C 0.11 2.43 3.11 -67.63 -0.21 2.22 16 7 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 8 N -0.82 -16.78 8.44 -4.60 -0.04 -16.82 16 9 C 0.21 5.30 1.77 -68.83 -0.12 5.18 16 10 H 0.03 0.90 7.23 -51.93 -0.38 0.53 16 11 C -0.50 -13.40 5.71 -34.44 -0.20 -13.59 16 12 H 0.06 1.71 7.67 -52.49 -0.40 1.31 16 13 C 0.06 1.65 5.45 -17.82 -0.10 1.56 16 14 N -0.90 -25.71 12.76 55.43 0.71 -25.00 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 20 H 0.07 1.68 6.96 -51.93 -0.36 1.32 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.45 7.73 -51.93 -0.40 1.05 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.31 5.42 9.04 -39.29 -0.36 5.06 16 29 H 0.35 7.41 7.80 -39.29 -0.31 7.10 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 238.68 15.07 3.60 3.60 Total: -1.00 -28.16 238.68 -6.96 -35.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.71 Total: 6.47 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.40 Total: -6.33 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.42 Total: -54.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.16 -6.96 -35.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.355 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds