Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47013 * 85.01226 * 3 2 1 5 5 H 1.48506 * 109.47129 * 205.00498 * 3 2 1 6 6 H 1.48498 * 109.47256 * 325.00488 * 3 2 1 7 7 C 1.37882 * 120.00157 * 180.27931 * 2 1 3 8 8 H 1.07999 * 120.00291 * 180.75088 * 7 2 1 9 9 C 1.50699 * 119.99974 * 0.75006 * 7 2 1 10 10 H 1.09001 * 109.46869 * 54.34550 * 9 7 2 11 11 C 1.52997 * 109.47286 * 294.34692 * 9 7 2 12 12 N 1.46903 * 109.47350 * 176.61889 * 11 9 7 13 13 N 1.46899 * 109.47421 * 174.34482 * 9 7 2 14 14 C 1.48532 * 110.99882 * 177.60458 * 13 9 7 15 15 C 1.54947 * 103.22501 * 159.72214 * 14 13 9 16 16 C 1.54590 * 102.92026 * 322.58636 * 15 14 13 17 17 C 1.47900 * 111.00036 * 294.99913 * 13 9 7 18 18 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47357 * 296.61863 * 11 9 7 20 20 H 1.09002 * 109.47457 * 56.62133 * 11 9 7 21 21 H 1.00905 * 110.99609 * 180.02562 * 12 11 9 22 22 H 1.00896 * 110.99838 * 303.95353 * 12 11 9 23 23 H 1.09000 * 110.66868 * 278.15343 * 14 13 9 24 24 H 1.08997 * 110.67240 * 41.28667 * 14 13 9 25 25 H 1.08998 * 110.72062 * 204.22767 * 15 14 13 26 26 H 1.09002 * 110.87840 * 81.01320 * 15 14 13 27 27 H 1.09002 * 110.30907 * 263.04377 * 16 15 14 28 28 H 1.08995 * 110.31432 * 140.87325 * 16 15 14 29 29 H 1.08998 * 109.91853 * 333.51313 * 17 13 9 30 30 H 1.09009 * 109.91487 * 94.80175 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1072 1.3948 5 1 3.5955 1.4120 -0.5918 6 1 1.5033 2.6199 -0.8029 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1942 0.0064 9 6 1.2512 -2.4990 -0.0293 10 1 0.5603 -2.5045 -0.8723 11 6 0.4663 -2.6583 1.2744 12 7 -0.3313 -3.8907 1.2183 13 7 2.2014 -3.6107 -0.1677 14 6 1.4985 -4.9188 -0.1368 15 6 2.5128 -5.8821 -0.8031 16 6 3.1368 -5.0106 -1.9171 17 6 2.8945 -3.5561 -1.4731 18 1 -0.4849 0.8400 0.0004 19 1 1.1611 -2.7131 2.1124 20 1 -0.1959 -1.8027 1.4067 21 1 -0.8596 -4.0184 2.0684 22 1 -0.9380 -3.8923 0.4122 23 1 1.2966 -5.2229 0.8902 24 1 0.5751 -4.8731 -0.7142 25 1 2.0020 -6.7455 -1.2294 26 1 3.2736 -6.1992 -0.0898 27 1 2.6425 -5.2027 -2.8693 28 1 4.2056 -5.2083 -1.9982 29 1 2.2693 -3.0438 -2.2043 30 1 3.8470 -3.0369 -1.3664 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = 6.930194 kcal Electronic energy + Delta-G solvation = -11833.649772 eV Core-core repulsion = 9856.712600 eV Total energy + Delta-G solvation = -1976.937172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.05761 -34.36908 -32.27291 -30.35181 -27.83005 -26.59959 -23.78759 -20.86698 -19.98682 -19.35598 -16.39516 -15.34422 -15.04693 -14.58414 -13.96649 -13.29130 -12.83432 -12.45552 -12.18054 -11.68907 -11.51258 -10.99358 -10.95888 -10.57371 -10.56418 -10.12523 -9.89554 -9.85833 -9.74162 -9.04616 -8.47338 -7.50519 -7.05193 -6.05214 -4.08484 3.29350 3.36100 3.40910 4.40601 5.23365 5.25063 5.49820 5.53234 5.71977 5.76149 6.16965 6.23169 6.44922 6.48792 6.71169 6.75629 6.88272 6.92396 6.98670 7.14972 7.32493 7.61237 7.80369 7.95885 8.19783 8.31830 8.42304 8.65312 9.03860 9.57650 11.02161 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046522 B = 0.014156 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.722454 B = 1977.471265 C = 2437.748185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.214 3.786 10 H 0.000 1.000 11 C 0.066 3.934 12 N -0.853 5.853 13 N -0.512 5.512 14 C 0.059 3.941 15 C -0.133 4.133 16 C -0.133 4.133 17 C 0.050 3.950 18 H 0.260 0.740 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.317 0.683 22 H 0.327 0.673 23 H 0.094 0.906 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -6.827 -0.969 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.107 3.893 10 H 0.017 0.983 11 C -0.064 4.064 12 N -0.380 5.380 13 N -0.237 5.237 14 C -0.070 4.070 15 C -0.172 4.172 16 C -0.171 4.171 17 C -0.078 4.078 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.127 0.873 22 H 0.138 0.862 23 H 0.112 0.888 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.254 -6.985 -0.596 7.363 hybrid contribution -1.053 1.647 -0.635 2.056 sum 1.201 -5.337 -1.231 5.607 Atomic orbital electron populations 1.69916 1.05957 1.26575 1.51233 1.24984 0.94902 0.99295 0.95196 0.86488 0.79906 0.83128 0.77955 1.20736 1.19768 1.21341 1.21157 0.93548 0.89561 1.49626 0.91835 1.19381 0.89260 0.88221 0.92467 0.98256 1.22002 0.95795 0.88825 0.99760 1.59580 1.30375 1.41692 1.06341 1.64768 1.27756 1.02297 1.28833 1.23237 0.93215 0.89398 1.01103 1.22642 0.99257 0.97669 0.97593 1.22444 1.00052 0.96581 0.98038 1.22594 0.99413 0.94154 0.91675 0.93041 0.92882 0.92553 0.87333 0.86250 0.88774 0.95325 0.92727 0.91905 0.92783 0.92356 0.94549 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.70 55.43 0.65 -24.89 16 2 C 0.06 1.59 5.32 -17.82 -0.09 1.49 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.50 -13.90 8.05 -34.44 -0.28 -14.18 16 8 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 9 C 0.21 5.48 1.45 -68.87 -0.10 5.38 16 10 H 0.00 0.00 7.96 -51.93 -0.41 -0.42 16 11 C 0.07 1.58 6.14 -3.82 -0.02 1.56 16 12 N -0.85 -16.48 6.05 -10.37 -0.06 -16.54 16 13 N -0.51 -11.67 5.10 -223.88 -1.14 -12.81 16 14 C 0.06 1.16 4.70 -1.89 -0.01 1.15 16 15 C -0.13 -2.21 7.06 -24.87 -0.18 -2.39 16 16 C -0.13 -2.24 6.93 -25.38 -0.18 -2.42 16 17 C 0.05 1.05 5.96 -2.76 -0.02 1.04 16 18 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 19 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 20 H 0.06 1.48 6.44 -51.93 -0.33 1.15 16 21 H 0.32 5.35 9.08 -39.29 -0.36 5.00 16 22 H 0.33 6.25 8.45 -39.29 -0.33 5.92 16 23 H 0.09 1.88 6.76 -51.93 -0.35 1.53 16 24 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.81 7.65 -51.93 -0.40 0.42 16 30 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 LS Contribution 237.69 15.07 3.58 3.58 Total: -1.00 -28.27 237.69 -7.50 -35.77 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.63 Total: 6.81 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.87 Total: -8.37 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.56 Total: -54.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.27 -7.50 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.697 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds