Wall clock time and date at job start Mon Mar 30 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47013 * 85.01226 * 3 2 1 5 5 H 1.48506 * 109.47129 * 205.00498 * 3 2 1 6 6 H 1.48498 * 109.47256 * 325.00488 * 3 2 1 7 7 C 1.37882 * 120.00157 * 180.27931 * 2 1 3 8 8 H 1.07999 * 120.00291 * 180.75088 * 7 2 1 9 9 C 1.50699 * 119.99974 * 0.75006 * 7 2 1 10 10 H 1.09001 * 109.46869 * 54.34550 * 9 7 2 11 11 C 1.52997 * 109.47286 * 294.34692 * 9 7 2 12 12 N 1.46903 * 109.47350 * 176.61889 * 11 9 7 13 13 N 1.46899 * 109.47421 * 174.34482 * 9 7 2 14 14 C 1.48532 * 110.99882 * 177.60458 * 13 9 7 15 15 C 1.54947 * 103.22501 * 159.72214 * 14 13 9 16 16 C 1.54590 * 102.92026 * 322.58636 * 15 14 13 17 17 C 1.47900 * 111.00036 * 294.99913 * 13 9 7 18 18 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47357 * 296.61863 * 11 9 7 20 20 H 1.09002 * 109.47457 * 56.62133 * 11 9 7 21 21 H 1.00905 * 110.99609 * 180.02562 * 12 11 9 22 22 H 1.00896 * 110.99838 * 303.95353 * 12 11 9 23 23 H 1.09000 * 110.66868 * 278.15343 * 14 13 9 24 24 H 1.08997 * 110.67240 * 41.28667 * 14 13 9 25 25 H 1.08998 * 110.72062 * 204.22767 * 15 14 13 26 26 H 1.09002 * 110.87840 * 81.01320 * 15 14 13 27 27 H 1.09002 * 110.30907 * 263.04377 * 16 15 14 28 28 H 1.08995 * 110.31432 * 140.87325 * 16 15 14 29 29 H 1.08998 * 109.91853 * 333.51313 * 17 13 9 30 30 H 1.09009 * 109.91487 * 94.80175 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1072 1.3948 5 1 3.5955 1.4120 -0.5918 6 1 1.5033 2.6199 -0.8029 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1942 0.0064 9 6 1.2512 -2.4990 -0.0293 10 1 0.5603 -2.5045 -0.8723 11 6 0.4663 -2.6583 1.2744 12 7 -0.3313 -3.8907 1.2183 13 7 2.2014 -3.6107 -0.1677 14 6 1.4985 -4.9188 -0.1368 15 6 2.5128 -5.8821 -0.8031 16 6 3.1368 -5.0106 -1.9171 17 6 2.8945 -3.5561 -1.4731 18 1 -0.4849 0.8400 0.0004 19 1 1.1611 -2.7131 2.1124 20 1 -0.1959 -1.8027 1.4067 21 1 -0.8596 -4.0184 2.0684 22 1 -0.9380 -3.8923 0.4122 23 1 1.2966 -5.2229 0.8902 24 1 0.5751 -4.8731 -0.7142 25 1 2.0020 -6.7455 -1.2294 26 1 3.2736 -6.1992 -0.0898 27 1 2.6425 -5.2027 -2.8693 28 1 4.2056 -5.2083 -1.9982 29 1 2.2693 -3.0438 -2.2043 30 1 3.8470 -3.0369 -1.3664 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:06 Heat of formation + Delta-G solvation = -14.018288 kcal Electronic energy + Delta-G solvation = -11834.558167 eV Core-core repulsion = 9856.712600 eV Total energy + Delta-G solvation = -1977.845566 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75567 -36.16810 -34.26453 -32.07296 -29.41641 -28.47096 -25.78203 -22.62758 -21.45817 -21.19906 -18.47385 -17.17827 -16.58157 -16.45377 -15.74617 -15.08732 -14.50723 -14.19746 -14.00137 -13.35120 -13.24957 -12.89907 -12.85163 -12.40311 -12.04344 -11.84539 -11.71381 -11.61735 -11.27588 -11.05633 -10.57946 -9.22941 -8.89202 -8.16815 -6.28417 1.39023 1.39796 1.51238 2.39504 3.10745 3.59364 3.98994 4.07216 4.09749 4.29611 4.65862 4.77539 4.84520 4.92588 5.05763 5.09457 5.16623 5.29755 5.30557 5.49535 5.56115 5.65812 5.70395 6.05586 6.42271 6.45485 6.71618 6.76176 6.94308 7.42150 8.88802 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046522 B = 0.014156 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.722454 B = 1977.471265 C = 2437.748185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.221 3.779 10 H -0.038 1.038 11 C 0.083 3.917 12 N -0.836 5.836 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.124 4.124 16 C -0.124 4.124 17 C 0.046 3.954 18 H 0.262 0.738 19 H 0.043 0.957 20 H 0.028 0.972 21 H 0.335 0.665 22 H 0.331 0.669 23 H 0.092 0.908 24 H 0.021 0.979 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.011 0.989 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -7.818 -1.040 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.113 3.887 10 H -0.020 1.020 11 C -0.048 4.048 12 N -0.364 5.364 13 N -0.250 5.250 14 C -0.070 4.070 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.083 4.083 18 H 0.071 0.929 19 H 0.061 0.939 20 H 0.046 0.954 21 H 0.147 0.853 22 H 0.142 0.858 23 H 0.110 0.890 24 H 0.039 0.961 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.029 0.971 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.935 -8.002 -0.660 8.549 hybrid contribution -1.286 1.920 -0.613 2.391 sum 1.649 -6.082 -1.273 6.429 Atomic orbital electron populations 1.70028 1.07141 1.27386 1.51501 1.25734 0.95748 1.02475 0.94691 0.85507 0.78688 0.79059 0.78197 1.19998 1.19428 1.20758 1.21383 0.93191 0.91159 1.50197 0.92955 1.19164 0.89044 0.88827 0.91692 1.02046 1.21603 0.95375 0.89478 0.98363 1.59429 1.30642 1.38844 1.07508 1.64705 1.27416 1.02836 1.30000 1.23238 0.93774 0.88612 1.01339 1.22614 0.98613 0.97599 0.97358 1.22404 1.01834 0.93219 0.98709 1.22631 0.98132 0.97098 0.90400 0.92916 0.93873 0.95380 0.85320 0.85813 0.88983 0.96094 0.89820 0.90968 0.91269 0.90092 0.97067 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.30 11.70 21.45 0.25 -53.05 16 2 C 0.01 0.69 5.32 84.66 0.45 1.14 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.52 -29.59 8.05 25.60 0.21 -29.39 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.22 11.58 1.45 44.17 0.06 11.64 16 10 H -0.04 -2.23 7.96 -2.39 -0.02 -2.25 16 11 C 0.08 4.02 6.14 86.30 0.53 4.55 16 12 N -0.84 -31.82 6.05 -186.72 -1.13 -32.95 16 13 N -0.52 -23.93 5.10 -862.23 -4.40 -28.33 16 14 C 0.06 2.21 4.70 86.65 0.41 2.61 16 15 C -0.12 -3.70 7.06 31.80 0.22 -3.48 16 16 C -0.12 -3.84 6.93 31.47 0.22 -3.62 16 17 C 0.05 1.92 5.96 86.45 0.51 2.43 16 18 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 19 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 20 H 0.03 1.51 6.44 -2.39 -0.02 1.50 16 21 H 0.33 10.89 9.08 -89.69 -0.81 10.07 16 22 H 0.33 12.52 8.45 -89.70 -0.76 11.76 16 23 H 0.09 3.51 6.76 -2.39 -0.02 3.49 16 24 H 0.02 0.82 7.13 -2.39 -0.02 0.80 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.01 0.50 7.65 -2.39 -0.02 0.49 16 30 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -60.97 237.69 -1.08 -62.05 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.45 Total: 20.01 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 2.62 Total: -14.11 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.27 Total: -114.33 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.97 -1.08 -62.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.036 kcal (2) G-P(sol) polarization free energy of solvation -60.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds