Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48493 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99959 * 3 2 1 6 6 H 1.48495 * 109.47289 * 59.99368 * 3 2 1 7 7 C 1.37881 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00071 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46796 * 299.99579 * 9 7 2 11 11 C 1.52999 * 109.47401 * 59.99571 * 9 7 2 12 12 N 1.46892 * 109.47013 * 175.00066 * 11 9 7 13 13 N 1.46896 * 109.47068 * 179.97438 * 9 7 2 14 14 C 1.47906 * 111.00163 * 59.99762 * 13 9 7 15 15 C 1.53997 * 107.05871 * 214.15425 * 14 13 9 16 16 C 1.54593 * 105.14126 * 1.22735 * 15 14 13 17 17 C 1.48529 * 111.00073 * 302.60451 * 13 9 7 18 18 H 0.96993 * 119.99587 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.46833 * 295.00632 * 11 9 7 20 20 H 1.09003 * 109.46797 * 54.99805 * 11 9 7 21 21 H 1.00907 * 110.99750 * 180.02562 * 12 11 9 22 22 H 1.00896 * 111.00568 * 303.95232 * 12 11 9 23 23 H 1.08998 * 109.91583 * 94.80499 * 14 13 9 24 24 H 1.09004 * 109.91554 * 333.51082 * 14 13 9 25 25 H 1.09005 * 110.30580 * 120.14185 * 15 14 13 26 26 H 1.09003 * 110.31005 * 242.30817 * 15 14 13 27 27 H 1.08999 * 110.72465 * 140.31492 * 16 15 14 28 28 H 1.08997 * 110.72026 * 263.60107 * 16 15 14 29 29 H 1.08995 * 110.67216 * 41.28703 * 17 13 9 30 30 H 1.09004 * 110.66395 * 278.15418 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2489 12 7 -0.2703 -3.9002 -1.3107 13 7 2.2056 -3.6157 0.0005 14 6 3.0749 -3.5699 1.1963 15 6 4.4576 -4.0972 0.7701 16 6 4.3230 -4.4107 -0.7377 17 6 3.1194 -3.5347 -1.1676 18 1 -0.4849 0.8400 -0.0004 19 1 -0.3935 -1.8056 -1.2057 20 1 0.9874 -2.4340 -2.1365 21 1 -0.8567 -3.9791 -2.1281 22 1 0.4170 -4.6384 -1.2866 23 1 2.6613 -4.2040 1.9805 24 1 3.1625 -2.5435 1.5526 25 1 5.2194 -3.3344 0.9314 26 1 4.7045 -5.0027 1.3243 27 1 5.2250 -4.1173 -1.2747 28 1 4.1062 -5.4674 -0.8940 29 1 3.4346 -2.5055 -1.3390 30 1 2.6431 -3.9457 -2.0578 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = 0.514466 kcal Electronic energy + Delta-G solvation = -11920.239319 eV Core-core repulsion = 9943.023941 eV Total energy + Delta-G solvation = -1977.215379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.23153 -34.29351 -32.17249 -30.33057 -28.01120 -26.45931 -23.86302 -21.32511 -20.04689 -19.08054 -16.53256 -15.34676 -14.99890 -14.32982 -14.15952 -13.50305 -12.89095 -12.51171 -12.11136 -11.89362 -11.26663 -11.01388 -10.83899 -10.65563 -10.40603 -10.27718 -10.02250 -9.96864 -9.75015 -9.25063 -8.49351 -7.46445 -7.18041 -6.02915 -4.15403 3.23513 3.32349 3.35187 4.36512 5.15488 5.20757 5.40012 5.45125 5.67001 5.95707 6.10951 6.18144 6.36191 6.39188 6.59945 6.70451 6.78916 6.87937 6.91686 7.00050 7.45225 7.62965 7.88036 8.04501 8.22210 8.26542 8.51596 8.60338 8.97508 9.51632 10.97681 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.036073 B = 0.016893 C = 0.012961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.010670 B = 1657.107793 C = 2159.738638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.206 3.794 10 H 0.046 0.954 11 C 0.076 3.924 12 N -0.851 5.851 13 N -0.515 5.515 14 C 0.038 3.962 15 C -0.128 4.128 16 C -0.125 4.125 17 C 0.037 3.963 18 H 0.262 0.738 19 H 0.097 0.903 20 H -0.004 1.004 21 H 0.314 0.686 22 H 0.334 0.666 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -5.206 -1.645 7.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.099 3.901 10 H 0.064 0.936 11 C -0.055 4.055 12 N -0.379 5.379 13 N -0.240 5.240 14 C -0.090 4.090 15 C -0.166 4.166 16 C -0.163 4.163 17 C -0.091 4.091 18 H 0.072 0.928 19 H 0.116 0.884 20 H 0.014 0.986 21 H 0.123 0.877 22 H 0.146 0.854 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.695 -5.331 -0.947 7.167 hybrid contribution 1.443 1.730 -0.914 2.431 sum 6.139 -3.602 -1.861 7.357 Atomic orbital electron populations 1.69903 1.05819 1.26544 1.49784 1.24957 0.94811 0.99049 0.94665 0.86599 0.80119 0.83989 0.77682 1.19912 1.20981 1.20899 1.21725 0.93264 0.91656 1.51854 0.92195 1.19403 0.89728 0.85785 0.95185 0.93641 1.22005 0.97772 0.89437 0.96256 1.58875 1.27270 1.06147 1.45618 1.65043 1.13720 1.44736 1.00464 1.22704 0.91091 1.00627 0.94626 1.22367 0.98007 0.99984 0.96234 1.22479 0.98095 0.99901 0.95801 1.23099 0.92280 0.98806 0.94944 0.92831 0.88448 0.98573 0.87681 0.85385 0.92332 0.92150 0.92492 0.92400 0.92481 0.91923 0.92383 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 11.38 55.43 0.63 -24.39 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.55 -14.61 6.34 -34.44 -0.22 -14.83 16 8 H 0.06 1.61 6.03 -52.48 -0.32 1.29 16 9 C 0.21 5.23 2.12 -68.87 -0.15 5.09 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 11 C 0.08 1.85 5.71 -3.83 -0.02 1.83 16 12 N -0.85 -17.91 9.61 -10.37 -0.10 -18.01 16 13 N -0.52 -11.19 4.37 -223.88 -0.98 -12.17 16 14 C 0.04 0.76 6.33 -2.75 -0.02 0.75 16 15 C -0.13 -2.11 6.93 -25.37 -0.18 -2.29 16 16 C -0.12 -2.03 7.06 -24.87 -0.18 -2.20 16 17 C 0.04 0.73 5.31 -1.90 -0.01 0.72 16 18 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 19 H 0.10 2.66 6.22 -51.93 -0.32 2.33 16 20 H 0.00 -0.10 7.26 -51.93 -0.38 -0.47 16 21 H 0.31 5.78 9.08 -39.29 -0.36 5.42 16 22 H 0.33 6.71 8.13 -39.29 -0.32 6.39 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 1.35 6.28 -51.93 -0.33 1.02 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.28 6.06 -51.93 -0.31 0.96 16 30 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 LS Contribution 235.35 15.07 3.55 3.55 Total: -1.00 -27.79 235.35 -7.19 -34.99 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.41 Total: 9.18 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.86 Total: -9.18 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.45 Total: -54.56 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.79 -7.19 -34.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.500 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds