Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48493 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99959 * 3 2 1 6 6 H 1.48495 * 109.47289 * 59.99368 * 3 2 1 7 7 C 1.37881 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00071 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46796 * 299.99579 * 9 7 2 11 11 C 1.52999 * 109.47401 * 59.99571 * 9 7 2 12 12 N 1.46892 * 109.47013 * 175.00066 * 11 9 7 13 13 N 1.46896 * 109.47068 * 179.97438 * 9 7 2 14 14 C 1.47906 * 111.00163 * 59.99762 * 13 9 7 15 15 C 1.53997 * 107.05871 * 214.15425 * 14 13 9 16 16 C 1.54593 * 105.14126 * 1.22735 * 15 14 13 17 17 C 1.48529 * 111.00073 * 302.60451 * 13 9 7 18 18 H 0.96993 * 119.99587 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.46833 * 295.00632 * 11 9 7 20 20 H 1.09003 * 109.46797 * 54.99805 * 11 9 7 21 21 H 1.00907 * 110.99750 * 180.02562 * 12 11 9 22 22 H 1.00896 * 111.00568 * 303.95232 * 12 11 9 23 23 H 1.08998 * 109.91583 * 94.80499 * 14 13 9 24 24 H 1.09004 * 109.91554 * 333.51082 * 14 13 9 25 25 H 1.09005 * 110.30580 * 120.14185 * 15 14 13 26 26 H 1.09003 * 110.31005 * 242.30817 * 15 14 13 27 27 H 1.08999 * 110.72465 * 140.31492 * 16 15 14 28 28 H 1.08997 * 110.72026 * 263.60107 * 16 15 14 29 29 H 1.08995 * 110.67216 * 41.28703 * 17 13 9 30 30 H 1.09004 * 110.66395 * 278.15418 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2489 12 7 -0.2703 -3.9002 -1.3107 13 7 2.2056 -3.6157 0.0005 14 6 3.0749 -3.5699 1.1963 15 6 4.4576 -4.0972 0.7701 16 6 4.3230 -4.4107 -0.7377 17 6 3.1194 -3.5347 -1.1676 18 1 -0.4849 0.8400 -0.0004 19 1 -0.3935 -1.8056 -1.2057 20 1 0.9874 -2.4340 -2.1365 21 1 -0.8567 -3.9791 -2.1281 22 1 0.4170 -4.6384 -1.2866 23 1 2.6613 -4.2040 1.9805 24 1 3.1625 -2.5435 1.5526 25 1 5.2194 -3.3344 0.9314 26 1 4.7045 -5.0027 1.3243 27 1 5.2250 -4.1173 -1.2747 28 1 4.1062 -5.4674 -0.8940 29 1 3.4346 -2.5055 -1.3390 30 1 2.6431 -3.9457 -2.0578 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = -20.293879 kcal Electronic energy + Delta-G solvation = -11921.141637 eV Core-core repulsion = 9943.023941 eV Total energy + Delta-G solvation = -1978.117696 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.91154 -36.10016 -34.18192 -32.02438 -29.54166 -28.35700 -25.85852 -23.03684 -21.48415 -20.96342 -18.51623 -17.18944 -16.66245 -16.02089 -15.96350 -15.38054 -14.53070 -14.15487 -13.99735 -13.60570 -13.04901 -12.86455 -12.64455 -12.21442 -12.11056 -11.94841 -11.81801 -11.70688 -11.35544 -11.15204 -10.59026 -9.27585 -9.01443 -8.08938 -6.30696 1.34984 1.37592 1.47705 2.37157 3.10253 3.53412 3.98690 4.00530 4.16479 4.34216 4.63701 4.71250 4.82526 4.92090 4.97507 5.05673 5.14501 5.23112 5.31191 5.45254 5.47858 5.59532 5.86813 6.07261 6.30357 6.47542 6.61316 6.87734 7.01328 7.39867 8.88604 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.036073 B = 0.016893 C = 0.012961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.010670 B = 1657.107793 C = 2159.738638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.214 3.786 10 H 0.000 1.000 11 C 0.091 3.909 12 N -0.848 5.848 13 N -0.516 5.516 14 C 0.032 3.968 15 C -0.120 4.120 16 C -0.113 4.113 17 C 0.034 3.966 18 H 0.263 0.737 19 H 0.066 0.934 20 H -0.007 1.007 21 H 0.332 0.668 22 H 0.343 0.657 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -6.024 -2.103 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.074 0.926 9 C 0.105 3.895 10 H 0.018 0.982 11 C -0.041 4.041 12 N -0.378 5.378 13 N -0.239 5.239 14 C -0.097 4.097 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.094 4.094 18 H 0.072 0.928 19 H 0.085 0.915 20 H 0.011 0.989 21 H 0.143 0.857 22 H 0.156 0.844 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.268 -6.171 -1.412 8.909 hybrid contribution 0.928 1.926 -0.754 2.267 sum 7.196 -4.245 -2.166 8.631 Atomic orbital electron populations 1.70036 1.07138 1.27301 1.50628 1.25712 0.95593 1.02322 0.94490 0.85601 0.78987 0.79959 0.77681 1.19371 1.20480 1.20662 1.21920 0.93135 0.92610 1.51403 0.92595 1.19114 0.90126 0.86725 0.93505 0.98233 1.21622 0.96647 0.90196 0.95586 1.58718 1.27406 1.04813 1.46883 1.64967 1.14306 1.42624 1.02044 1.22776 0.93351 0.99293 0.94248 1.22340 0.95440 1.01229 0.96787 1.22461 0.97128 1.00123 0.95407 1.23138 0.93537 0.98310 0.94419 0.92800 0.91534 0.98917 0.85684 0.84374 0.91821 0.95157 0.91935 0.89572 0.90214 0.90042 0.95019 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.92 11.38 21.45 0.24 -52.67 16 2 C 0.02 1.05 5.30 84.66 0.45 1.50 16 3 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.55 -30.08 6.34 25.60 0.16 -29.91 16 8 H 0.06 3.04 6.03 -2.91 -0.02 3.02 16 9 C 0.21 11.07 2.12 44.17 0.09 11.16 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C 0.09 4.49 5.71 86.30 0.49 4.98 16 12 N -0.85 -35.21 9.61 -186.73 -1.80 -37.01 16 13 N -0.52 -22.16 4.37 -862.23 -3.77 -25.93 16 14 C 0.03 1.25 6.33 86.45 0.55 1.80 16 15 C -0.12 -3.61 6.93 31.47 0.22 -3.39 16 16 C -0.11 -3.28 7.06 31.80 0.22 -3.06 16 17 C 0.03 1.30 5.31 86.65 0.46 1.76 16 18 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 19 H 0.07 3.73 6.22 -2.39 -0.01 3.71 16 20 H -0.01 -0.36 7.26 -2.39 -0.02 -0.38 16 21 H 0.33 11.85 9.08 -89.69 -0.81 11.03 16 22 H 0.34 13.32 8.13 -89.70 -0.73 12.59 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.03 1.36 6.28 -2.38 -0.01 1.35 16 25 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.03 1.37 6.06 -2.39 -0.01 1.36 16 30 H 0.06 2.33 7.79 -2.39 -0.02 2.31 16 Total: -1.00 -60.16 235.35 -1.06 -61.22 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.41 Total: 23.96 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 2.65 Total: -15.15 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.32 Total: -115.61 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -60.16 -1.06 -61.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.925 kcal (2) G-P(sol) polarization free energy of solvation -60.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds