Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47587 * 2 1 4 4 C 1.53095 * 109.47596 * 120.02249 * 2 1 3 5 5 C 1.53183 * 109.15713 * 177.59472 * 4 2 1 6 6 C 1.50700 * 109.54126 * 183.06505 * 5 4 2 7 7 H 1.08002 * 120.00053 * 34.98000 * 6 5 4 8 8 C 1.37874 * 119.99960 * 214.98297 * 6 5 4 9 9 N 1.31512 * 120.00243 * 186.01995 * 8 6 5 10 10 Si 1.86806 * 119.99991 * 6.02012 * 8 6 5 11 11 H 1.48502 * 109.47151 * 84.76554 * 10 8 6 12 12 H 1.48497 * 109.46898 * 204.76738 * 10 8 6 13 13 H 1.48495 * 109.47037 * 324.76853 * 10 8 6 14 14 C 1.53182 * 109.03383 * 303.01597 * 5 4 2 15 15 C 1.53091 * 109.16374 * 56.98809 * 14 5 4 16 16 H 1.08999 * 109.47873 * 182.40913 * 15 14 5 17 17 C 1.53000 * 109.48230 * 62.36687 * 15 14 5 18 18 O 1.42903 * 109.47901 * 239.96263 * 2 1 3 19 19 H 1.08997 * 109.47063 * 299.97521 * 1 2 3 20 20 H 1.09000 * 109.46925 * 59.98219 * 1 2 3 21 21 H 1.09003 * 109.46645 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.52192 * 57.69065 * 4 2 1 23 23 H 1.09003 * 109.57391 * 297.52529 * 4 2 1 24 24 H 1.08998 * 109.54528 * 62.88784 * 5 4 2 25 25 H 0.97003 * 120.00420 * 179.97438 * 9 8 6 26 26 H 1.09001 * 109.51892 * 176.88825 * 14 5 4 27 27 H 1.08992 * 109.52387 * 297.07573 * 14 5 4 28 28 H 1.08994 * 109.47212 * 300.06111 * 17 15 14 29 29 H 1.08999 * 109.46958 * 60.06497 * 17 15 14 30 30 H 1.08998 * 109.47060 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5711 -0.7707 1.2123 6 6 4.0801 -1.5455 2.4005 7 1 3.5204 -2.3901 2.7744 8 6 5.2601 -1.1760 3.0103 9 7 5.7655 -1.9198 3.9699 10 14 6.1412 0.3813 2.4734 11 1 5.5657 1.5478 3.1899 12 1 7.5868 0.2675 2.7937 13 1 5.9716 0.5665 1.0099 14 6 4.0176 -1.4601 -0.0807 15 6 3.4308 -0.7094 -1.2790 16 1 3.7101 -1.2206 -2.2003 17 6 3.9761 0.7199 -1.3025 18 8 2.0066 -0.6744 -1.1663 19 1 -0.3633 0.5134 0.8902 20 1 -0.3633 0.5141 -0.8898 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6443 -1.7374 1.2711 23 1 1.7148 -0.1850 2.1405 24 1 3.9689 0.2437 1.2409 25 1 6.5959 -1.6601 4.3987 26 1 5.1059 -1.4498 -0.1419 27 1 3.6614 -2.4901 -0.0861 28 1 3.6971 1.2305 -0.3809 29 1 5.0624 0.6929 -1.3885 30 1 3.5579 1.2543 -2.1555 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = -69.463169 kcal Electronic energy + Delta-G solvation = -11961.454694 eV Core-core repulsion = 9948.912106 eV Total energy + Delta-G solvation = -2012.542588 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.15552 -33.92654 -32.75893 -31.67065 -29.07300 -25.90998 -25.21541 -21.91326 -20.78850 -18.47116 -16.90400 -15.66128 -15.36740 -14.16543 -14.02865 -13.69129 -13.19139 -12.58734 -12.21344 -12.19060 -11.71626 -11.50833 -11.14679 -11.02095 -10.92543 -10.57534 -10.30887 -9.86737 -9.74634 -9.33364 -9.07544 -8.53302 -8.41601 -6.07993 -4.06232 3.26548 3.35243 3.36299 4.31786 4.41132 5.18967 5.41955 5.46867 5.61950 5.67677 5.75357 5.79178 5.99372 6.18205 6.20868 6.25798 6.31912 6.38580 6.50573 6.57796 6.78715 6.87261 7.03300 7.33099 7.46325 7.77670 7.89406 8.53806 8.97881 9.55637 11.05564 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.015286 C = 0.013549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.560329 B = 1831.323569 C = 2066.070800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.051 0.949 4 C -0.131 4.131 5 C 0.013 3.987 6 C -0.509 4.509 7 H 0.072 0.928 8 C 0.070 3.930 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.262 1.262 14 C -0.138 4.138 15 C 0.083 3.917 16 H 0.087 0.913 17 C -0.183 4.183 18 O -0.383 6.383 19 H 0.066 0.934 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 5.313 -8.529 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 H 0.069 0.931 4 C -0.169 4.169 5 C -0.006 4.006 6 C -0.547 4.547 7 H 0.090 0.910 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.186 1.186 14 C -0.177 4.177 15 C 0.026 3.974 16 H 0.105 0.895 17 C -0.240 4.240 18 O -0.303 6.303 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.209 5.210 -8.522 11.265 hybrid contribution 0.878 0.889 0.085 1.253 sum -4.331 6.099 -8.437 11.275 Atomic orbital electron populations 1.21750 0.94314 1.02377 1.01384 1.22193 0.93813 0.95367 0.86627 0.93125 1.22240 0.98764 1.00298 0.95628 1.19209 0.91544 0.96070 0.93736 1.21012 1.06992 1.15010 1.11690 0.91000 1.25075 0.96747 0.96595 0.94748 1.69915 1.20531 1.37983 1.25549 0.86916 0.78736 0.84376 0.79869 1.20286 1.21666 1.18621 1.22448 1.00056 0.99946 0.95221 1.22254 0.80779 0.95172 0.99204 0.89475 1.22440 1.01413 0.98252 1.01910 1.87837 1.21121 1.78065 1.43280 0.91551 0.92828 0.92148 0.92116 0.92026 0.94956 0.92714 0.92283 0.92002 0.91803 0.92002 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.56 37.16 0.36 -1.69 16 2 C 0.08 1.38 2.94 -26.68 -0.08 1.30 16 3 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 4 C -0.13 -2.71 4.69 -26.59 -0.12 -2.83 16 5 C 0.01 0.31 1.56 -91.58 -0.14 0.17 16 6 C -0.51 -14.29 8.87 -34.44 -0.31 -14.60 16 7 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 10 Si 0.87 21.41 27.02 -169.99 -4.59 16.81 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.26 -6.03 6.78 56.52 0.38 -5.64 16 14 C -0.14 -2.96 4.91 -26.59 -0.13 -3.09 16 15 C 0.08 1.52 3.91 -26.68 -0.10 1.42 16 16 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 17 C -0.18 -3.08 8.65 37.16 0.32 -2.76 16 18 O -0.38 -7.23 10.24 -35.23 -0.36 -7.60 16 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.03 0.76 3.72 -51.93 -0.19 0.57 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.14 4.97 -51.93 -0.26 0.89 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 235.60 15.07 3.55 3.55 Total: -1.00 -29.82 235.60 -5.52 -35.35 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.58 Total: -1.06 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.31 Total: -20.18 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.36 Total: -7.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.82 -5.52 -35.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.118 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds