Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46810 * 2 1 4 4 C 1.50698 * 109.46860 * 239.99953 * 2 1 3 5 5 H 1.07999 * 120.00153 * 239.99619 * 4 2 1 6 6 C 1.37882 * 119.99619 * 60.00248 * 4 2 1 7 7 N 1.31510 * 120.00418 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99693 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47162 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47375 * 119.99581 * 8 6 4 11 11 H 1.48497 * 109.47018 * 239.99916 * 8 6 4 12 12 C 1.52999 * 109.47402 * 120.00111 * 2 1 3 13 13 H 1.08998 * 109.51962 * 60.12348 * 12 2 1 14 14 C 1.53173 * 109.57438 * 180.28450 * 12 2 1 15 15 C 1.53181 * 109.03676 * 176.92100 * 14 12 2 16 16 C 1.53100 * 109.15732 * 303.01504 * 15 14 12 17 17 O 1.42899 * 109.41499 * 57.61360 * 16 15 14 18 18 C 1.42908 * 114.09482 * 298.83529 * 17 16 15 19 19 H 1.09003 * 109.46531 * 299.99815 * 1 2 3 20 20 H 1.08993 * 109.47406 * 59.99774 * 1 2 3 21 21 H 1.08997 * 109.46758 * 180.02562 * 1 2 3 22 22 H 0.96999 * 120.00264 * 179.97438 * 7 6 4 23 23 H 1.08999 * 109.54116 * 296.77790 * 14 12 2 24 24 H 1.09000 * 109.54661 * 57.05006 * 14 12 2 25 25 H 1.08988 * 109.52544 * 62.91818 * 15 14 12 26 26 H 1.08996 * 109.52230 * 183.04989 * 15 14 12 27 27 H 1.08996 * 109.47674 * 177.59246 * 16 15 14 28 28 H 1.09003 * 109.48101 * 297.61458 * 16 15 14 29 29 H 1.08993 * 109.48601 * 301.17873 * 18 17 16 30 30 H 1.09001 * 109.47929 * 181.14345 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2856 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 6 2.0401 -0.7213 1.2492 13 1 1.6790 -1.7497 1.2489 14 6 3.5718 -0.7164 1.2551 15 6 4.0686 -1.3726 2.5470 16 6 3.4805 -0.6266 3.7477 17 8 2.0541 -0.6423 3.6646 18 6 1.5305 -0.0004 2.5000 19 1 -0.3632 0.5138 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.7087 1.1614 -3.4843 23 1 3.9415 -1.2766 0.3963 24 1 3.9334 0.3107 1.2054 25 1 3.7485 -2.4141 2.5730 26 1 5.1568 -1.3249 2.5847 27 1 3.7963 -1.1153 4.6694 28 1 3.8338 0.4046 3.7436 29 1 1.8580 1.0389 2.4794 30 1 0.4413 -0.0381 2.5229 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -90.018781 kcal Electronic energy + Delta-G solvation = -11745.381081 eV Core-core repulsion = 9731.947135 eV Total energy + Delta-G solvation = -2013.433946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.32684 -36.82501 -34.22390 -33.10323 -29.85296 -27.54974 -25.43279 -24.71886 -21.71737 -20.72201 -18.43111 -17.19682 -16.80513 -16.41290 -15.63515 -15.06916 -14.68130 -14.27003 -14.10914 -13.46090 -13.40229 -12.87531 -12.61709 -12.36696 -12.16107 -12.13339 -11.89979 -11.66816 -11.18192 -10.91808 -10.71325 -10.43366 -10.13976 -8.06957 -6.19380 1.39052 1.41517 1.52035 2.43576 3.05089 3.20480 4.02702 4.06947 4.13121 4.22138 4.43296 4.63324 4.69186 4.81336 4.87889 4.90138 5.03472 5.13372 5.17636 5.30320 5.37147 5.49422 5.52452 5.65809 5.98815 6.12917 6.35081 6.42648 6.91403 7.48238 8.97916 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059667 B = 0.011894 C = 0.010391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.161416 B = 2353.608233 C = 2694.103337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.047 3.953 3 H -0.003 1.003 4 C -0.520 4.520 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 C -0.103 4.103 13 H 0.051 0.949 14 C -0.107 4.107 15 C -0.150 4.150 16 C 0.056 3.944 17 O -0.403 6.403 18 C 0.070 3.930 19 H 0.034 0.966 20 H 0.053 0.947 21 H 0.024 0.976 22 H 0.259 0.741 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -2.459 8.706 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.029 3.971 3 H 0.015 0.985 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.122 4.122 13 H 0.070 0.930 14 C -0.145 4.145 15 C -0.187 4.187 16 C -0.020 4.020 17 O -0.322 6.322 18 C -0.006 4.006 19 H 0.053 0.947 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.341 -2.438 8.717 10.039 hybrid contribution 0.233 -0.100 -1.468 1.489 sum 4.574 -2.538 7.249 8.940 Atomic orbital electron populations 1.21732 0.98599 0.98763 0.99895 1.18608 0.92685 0.94120 0.91722 0.98473 1.21547 1.30474 1.12079 0.91688 0.92855 1.25724 0.95522 0.95789 1.01839 1.70024 1.38003 1.24306 1.23649 0.85628 0.78128 0.78770 0.79870 1.19181 1.20844 1.20773 1.21679 0.96134 0.99213 0.95179 0.93032 1.21497 0.95106 1.00241 0.97609 1.22204 1.01597 1.00112 0.94823 1.22760 0.80214 1.00076 0.98974 1.87836 1.21965 1.79424 1.43002 1.22678 0.98908 0.94883 0.84137 0.94679 0.92809 0.95687 0.93190 0.92681 0.93154 0.91787 0.89195 0.86802 0.92854 0.93625 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.62 71.98 0.62 -5.81 16 2 C 0.05 2.36 1.90 -11.54 -0.02 2.34 16 3 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 4 C -0.52 -28.48 7.88 25.60 0.20 -28.28 16 5 H 0.05 2.89 6.74 -2.91 -0.02 2.87 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 8 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 C -0.10 -4.28 1.93 -10.70 -0.02 -4.30 16 13 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.11 -3.99 5.00 30.71 0.15 -3.84 16 15 C -0.15 -4.28 6.14 30.69 0.19 -4.09 16 16 C 0.06 1.51 6.84 72.02 0.49 2.00 16 17 O -0.40 -13.63 10.77 -148.98 -1.60 -15.23 16 18 C 0.07 2.56 5.70 72.01 0.41 2.97 16 19 H 0.03 1.47 6.49 -2.39 -0.02 1.46 16 20 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16 21 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 23 H 0.05 2.23 6.76 -2.39 -0.02 2.21 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 3.28 6.57 -2.39 -0.02 3.27 16 Total: -1.00 -59.85 236.46 4.23 -55.62 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.09 Total: 5.01 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 2.47 Total: -38.06 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.24 Total: -53.28 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.60 Total: -15.23 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -59.85 4.23 -55.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.401 kcal (2) G-P(sol) polarization free energy of solvation -59.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds