Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00537 * 2 1 3 13 13 H 1.09001 * 109.51990 * 299.87103 * 12 2 1 14 14 C 1.53181 * 109.52116 * 179.68508 * 12 2 1 15 15 C 1.53173 * 109.03399 * 183.11204 * 14 12 2 16 16 C 1.53089 * 109.16612 * 56.98209 * 15 14 12 17 17 O 1.42904 * 109.41354 * 302.39036 * 16 15 14 18 18 C 1.42903 * 114.09602 * 61.15654 * 17 16 15 19 19 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.54219 * 302.97841 * 14 12 2 24 24 H 1.09001 * 109.54219 * 63.24788 * 14 12 2 25 25 H 1.08998 * 109.52389 * 297.07563 * 15 14 12 26 26 H 1.09000 * 109.51835 * 176.88625 * 15 14 12 27 27 H 1.09003 * 109.48347 * 182.40606 * 16 15 14 28 28 H 1.09007 * 109.48839 * 62.37776 * 16 15 14 29 29 H 1.09002 * 109.47566 * 178.85719 * 18 17 16 30 30 H 1.09003 * 109.48100 * 58.82890 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0400 -0.7211 -1.2493 13 1 1.6789 -1.7496 -1.2491 14 6 3.5718 -0.7150 -1.2545 15 6 4.0696 -1.3700 -2.5465 16 6 3.4816 -0.6242 -3.7471 17 8 2.0550 -0.6411 -3.6646 18 6 1.5304 -0.0003 -2.5000 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 0.7089 1.1611 3.4845 23 1 3.9324 0.3124 -1.2041 24 1 3.9415 -1.2752 -0.3957 25 1 3.7505 -2.4119 -2.5730 26 1 5.1578 -1.3203 -2.5841 27 1 3.7982 -1.1122 -4.6689 28 1 3.8338 0.4074 -3.7424 29 1 0.4413 -0.0389 -2.5235 30 1 1.8570 1.0395 -2.4789 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -89.914331 kcal Electronic energy + Delta-G solvation = -11745.324773 eV Core-core repulsion = 9731.895356 eV Total energy + Delta-G solvation = -2013.429417 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.32739 -36.82380 -34.22222 -33.10284 -29.85211 -27.54607 -25.43220 -24.71747 -21.71421 -20.72193 -18.42484 -17.19558 -16.80220 -16.41864 -15.63337 -15.06692 -14.68037 -14.26213 -14.11331 -13.45065 -13.40077 -12.83180 -12.65557 -12.37423 -12.16942 -12.13015 -11.89623 -11.67080 -11.18467 -10.92063 -10.71530 -10.42364 -10.14143 -8.06508 -6.19097 1.41433 1.42197 1.49622 2.43920 3.05053 3.20756 4.02725 4.06882 4.13155 4.22195 4.43221 4.63233 4.69184 4.81301 4.87913 4.90148 5.03456 5.13389 5.17516 5.30329 5.37150 5.49288 5.52460 5.65559 5.98923 6.12895 6.35063 6.42699 6.91264 7.48365 8.97999 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059670 B = 0.011894 C = 0.010392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.136892 B = 2353.508388 C = 2693.776223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.048 3.952 3 H -0.003 1.003 4 C -0.522 4.522 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.950 3.050 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.272 1.272 12 C -0.103 4.103 13 H 0.051 0.949 14 C -0.107 4.107 15 C -0.150 4.150 16 C 0.056 3.944 17 O -0.403 6.403 18 C 0.070 3.930 19 H 0.024 0.976 20 H 0.053 0.947 21 H 0.034 0.966 22 H 0.259 0.741 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -2.458 -8.674 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.029 3.971 3 H 0.015 0.985 4 C -0.560 4.560 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.776 3.224 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.197 1.197 12 C -0.122 4.122 13 H 0.070 0.930 14 C -0.144 4.144 15 C -0.187 4.187 16 C -0.020 4.020 17 O -0.322 6.322 18 C -0.006 4.006 19 H 0.043 0.957 20 H 0.072 0.928 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.336 -2.428 -8.680 10.002 hybrid contribution 0.243 -0.116 1.454 1.478 sum 4.579 -2.545 -7.227 8.926 Atomic orbital electron populations 1.21733 0.98614 0.98748 0.99894 1.18597 0.92669 0.94104 0.91703 0.98496 1.21492 1.30663 1.12163 0.91712 0.92852 1.25726 0.95501 0.95776 1.01830 1.70016 1.37918 1.24240 1.23772 0.85740 0.78823 0.78772 0.79093 1.21138 1.19833 1.19672 1.21680 0.96132 0.99217 0.95177 0.93016 1.21498 0.95102 1.00233 0.97614 1.22203 1.01588 1.00128 0.94814 1.22762 0.80213 1.00071 0.98986 1.87836 1.21953 1.79456 1.42981 1.22676 0.98893 0.94892 0.84143 0.95705 0.92807 0.94684 0.93176 0.93188 0.92660 0.91756 0.89202 0.86797 0.92868 0.88967 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.62 71.98 0.62 -5.81 16 2 C 0.05 2.39 1.89 -11.54 -0.02 2.37 16 3 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 4 C -0.52 -28.63 7.87 25.60 0.20 -28.42 16 5 H 0.05 2.87 6.74 -2.91 -0.02 2.86 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.30 16 8 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 C -0.10 -4.28 1.93 -10.70 -0.02 -4.30 16 13 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.11 -3.99 5.00 30.71 0.15 -3.84 16 15 C -0.15 -4.28 6.14 30.68 0.19 -4.09 16 16 C 0.06 1.50 6.84 72.01 0.49 2.00 16 17 O -0.40 -13.63 10.77 -148.98 -1.60 -15.24 16 18 C 0.07 2.56 5.70 72.01 0.41 2.97 16 19 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 20 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 21 H 0.03 1.47 6.49 -2.38 -0.02 1.45 16 22 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.05 2.23 6.76 -2.39 -0.02 2.22 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.09 3.29 6.57 -2.39 -0.02 3.27 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -59.78 236.46 4.23 -55.55 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.09 Total: 5.25 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 2.47 Total: -38.14 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.24 Total: -53.30 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.60 Total: -15.24 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.78 4.23 -55.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.367 kcal (2) G-P(sol) polarization free energy of solvation -59.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds