Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47234 * 240.00049 * 2 1 3 5 5 H 1.08002 * 119.99995 * 275.16438 * 4 2 1 6 6 C 1.37876 * 120.00032 * 95.16937 * 4 2 1 7 7 N 1.31510 * 119.99826 * 182.67670 * 6 4 2 8 8 Si 1.86794 * 120.00033 * 2.66829 * 6 4 2 9 9 H 1.48498 * 109.47365 * 84.78327 * 8 6 4 10 10 H 1.48505 * 109.46936 * 204.78130 * 8 6 4 11 11 H 1.48501 * 109.47396 * 324.77634 * 8 6 4 12 12 C 1.53002 * 109.47408 * 119.99979 * 2 1 3 13 13 C 1.53185 * 109.54174 * 300.00065 * 12 2 1 14 14 C 1.53085 * 109.21393 * 183.18577 * 13 12 2 15 15 O 1.42897 * 109.41938 * 57.57450 * 14 13 12 16 16 C 1.42894 * 114.09860 * 298.84471 * 15 14 13 17 17 C 1.53088 * 109.41852 * 61.15455 * 16 15 14 18 18 H 1.08997 * 109.47237 * 186.18272 * 1 2 3 19 19 H 1.09001 * 109.47413 * 306.17961 * 1 2 3 20 20 H 1.08997 * 109.47243 * 66.18444 * 1 2 3 21 21 H 0.97001 * 119.99938 * 179.97438 * 7 6 4 22 22 H 1.08998 * 109.61888 * 60.22149 * 12 2 1 23 23 H 1.08999 * 109.51922 * 63.24442 * 13 12 2 24 24 H 1.09000 * 109.51886 * 303.12171 * 13 12 2 25 25 H 1.08999 * 109.48082 * 177.56318 * 14 13 12 26 26 H 1.09010 * 109.47767 * 297.58907 * 14 13 12 27 27 H 1.09005 * 109.48185 * 181.13894 * 16 15 14 28 28 H 1.09004 * 109.48151 * 301.15815 * 16 15 14 29 29 H 1.09002 * 109.51771 * 62.29810 * 17 16 15 30 30 H 1.09002 * 109.52833 * 182.41869 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1330 -1.7857 -1.2299 6 6 2.3636 0.0124 -2.3569 7 7 2.7517 -0.6112 -3.4477 8 14 2.2608 1.8774 -2.3336 9 1 3.5179 2.4355 -1.7738 10 1 2.0694 2.3799 -3.7178 11 1 1.1133 2.2995 -1.4907 12 6 2.0400 -0.7212 1.2492 13 6 1.5303 -0.0004 2.5011 14 6 2.1093 -0.6800 3.7446 15 8 3.5365 -0.6648 3.6733 16 6 4.0719 -1.3658 2.5491 17 6 3.5718 -0.7138 1.2575 18 1 -0.3633 -1.0217 0.1107 19 1 -0.3634 0.6066 0.8295 20 1 -0.3633 0.4149 -0.9401 21 1 2.9844 -0.1027 -4.2403 22 1 1.6813 -1.7505 1.2497 23 1 0.4419 -0.0501 2.5322 24 1 1.8468 1.0423 2.4752 25 1 1.7842 -0.1441 4.6364 26 1 1.7586 -1.7110 3.7919 27 1 5.1607 -1.3239 2.5795 28 1 3.7472 -2.4059 2.5809 29 1 3.9305 0.3142 1.2059 30 1 3.9444 -1.2729 0.3991 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260422287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = -73.498137 kcal Electronic energy + Delta-G solvation = -11798.023716 eV Core-core repulsion = 9785.306159 eV Total energy + Delta-G solvation = -2012.717557 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.93862 -35.39146 -32.22394 -30.63843 -30.00021 -25.37129 -24.21885 -22.71129 -20.27432 -18.95188 -16.90541 -15.68376 -15.53730 -14.41975 -14.30290 -13.45811 -13.04291 -13.01809 -12.42480 -12.15672 -11.79911 -11.05510 -10.90042 -10.80100 -10.73536 -10.62626 -10.06917 -9.77695 -9.57182 -9.45182 -8.88035 -8.78507 -8.49486 -6.04966 -4.02543 3.30197 3.38557 3.41379 4.27069 4.44823 5.25507 5.35144 5.41579 5.52617 5.63573 5.70574 5.86880 6.00698 6.08478 6.31450 6.43738 6.47658 6.51803 6.59692 6.83735 6.93227 6.98997 7.09047 7.33507 7.53241 7.60425 7.82484 8.55779 8.99546 9.59180 11.08648 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.051021 B = 0.013335 C = 0.012396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.661080 B = 2099.159225 C = 2258.197566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 H 0.029 0.971 4 C -0.504 4.504 5 H 0.071 0.929 6 C 0.069 3.931 7 N -0.904 5.904 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.266 1.266 12 C -0.071 4.071 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.393 6.393 16 C 0.059 3.941 17 C -0.139 4.139 18 H 0.041 0.959 19 H 0.022 0.978 20 H 0.042 0.958 21 H 0.262 0.738 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 0.936 10.663 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 H 0.047 0.953 4 C -0.542 4.542 5 H 0.089 0.911 6 C -0.132 4.132 7 N -0.543 5.543 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.190 1.190 12 C -0.089 4.089 13 C -0.193 4.193 14 C -0.014 4.014 15 O -0.312 6.312 16 C -0.018 4.018 17 C -0.176 4.176 18 H 0.060 0.940 19 H 0.041 0.959 20 H 0.061 0.939 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.798 1.053 10.599 10.681 hybrid contribution -0.233 0.877 -0.449 1.012 sum -1.031 1.930 10.150 10.383 Atomic orbital electron populations 1.22026 0.99233 0.99450 0.98826 1.19179 0.92015 0.95825 0.93538 0.95315 1.20969 1.42798 0.95267 0.95167 0.91058 1.25037 0.94719 0.98034 0.95387 1.69903 1.46233 1.35694 1.02460 0.86895 0.79117 0.86822 0.76880 1.20276 1.21779 1.19045 1.21161 0.94449 0.99126 0.94200 1.22371 1.00616 1.00570 0.95754 1.22542 0.81272 0.99446 0.98149 1.87829 1.20407 1.76294 1.46677 1.22687 0.98104 0.94669 0.86311 1.22113 0.96800 1.01626 0.97105 0.94025 0.95876 0.93857 0.92791 0.92280 0.91326 0.91803 0.89938 0.93802 0.89700 0.93788 0.92172 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.64 37.16 0.32 -2.59 16 2 C 0.01 0.31 1.53 -91.77 -0.14 0.17 16 3 H 0.03 0.69 5.39 -51.93 -0.28 0.41 16 4 C -0.50 -13.78 7.69 -34.44 -0.26 -14.05 16 5 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 8 Si 0.87 21.73 26.93 -169.99 -4.58 17.15 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.36 6.90 56.52 0.39 -5.97 16 12 C -0.07 -1.39 1.85 -90.43 -0.17 -1.56 16 13 C -0.16 -2.60 4.97 -26.59 -0.13 -2.73 16 14 C 0.06 0.94 6.84 37.20 0.25 1.19 16 15 O -0.39 -6.67 10.76 -35.23 -0.38 -7.05 16 16 C 0.06 0.96 6.84 37.20 0.25 1.21 16 17 C -0.14 -2.68 5.11 -26.59 -0.14 -2.81 16 18 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 19 H 0.02 0.42 6.86 -51.93 -0.36 0.06 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.84 7.37 -51.93 -0.38 1.46 16 LS Contribution 237.74 15.07 3.58 3.58 Total: -1.00 -29.48 237.74 -5.45 -34.94 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.74 Total: -2.61 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.11 Total: -19.29 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.38 Total: -7.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.58 Total: 17.15 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.48 -5.45 -34.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.562 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds