Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47234 * 240.00049 * 2 1 3 5 5 H 1.08002 * 119.99995 * 275.16438 * 4 2 1 6 6 C 1.37876 * 120.00032 * 95.16937 * 4 2 1 7 7 N 1.31510 * 119.99826 * 182.67670 * 6 4 2 8 8 Si 1.86794 * 120.00033 * 2.66829 * 6 4 2 9 9 H 1.48498 * 109.47365 * 84.78327 * 8 6 4 10 10 H 1.48505 * 109.46936 * 204.78130 * 8 6 4 11 11 H 1.48501 * 109.47396 * 324.77634 * 8 6 4 12 12 C 1.53002 * 109.47408 * 119.99979 * 2 1 3 13 13 C 1.53185 * 109.54174 * 300.00065 * 12 2 1 14 14 C 1.53085 * 109.21393 * 183.18577 * 13 12 2 15 15 O 1.42897 * 109.41938 * 57.57450 * 14 13 12 16 16 C 1.42894 * 114.09860 * 298.84471 * 15 14 13 17 17 C 1.53088 * 109.41852 * 61.15455 * 16 15 14 18 18 H 1.08997 * 109.47237 * 186.18272 * 1 2 3 19 19 H 1.09001 * 109.47413 * 306.17961 * 1 2 3 20 20 H 1.08997 * 109.47243 * 66.18444 * 1 2 3 21 21 H 0.97001 * 119.99938 * 179.97438 * 7 6 4 22 22 H 1.08998 * 109.61888 * 60.22149 * 12 2 1 23 23 H 1.08999 * 109.51922 * 63.24442 * 13 12 2 24 24 H 1.09000 * 109.51886 * 303.12171 * 13 12 2 25 25 H 1.08999 * 109.48082 * 177.56318 * 14 13 12 26 26 H 1.09010 * 109.47767 * 297.58907 * 14 13 12 27 27 H 1.09005 * 109.48185 * 181.13894 * 16 15 14 28 28 H 1.09004 * 109.48151 * 301.15815 * 16 15 14 29 29 H 1.09002 * 109.51771 * 62.29810 * 17 16 15 30 30 H 1.09002 * 109.52833 * 182.41869 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1330 -1.7857 -1.2299 6 6 2.3636 0.0124 -2.3569 7 7 2.7517 -0.6112 -3.4477 8 14 2.2608 1.8774 -2.3336 9 1 3.5179 2.4355 -1.7738 10 1 2.0694 2.3799 -3.7178 11 1 1.1133 2.2995 -1.4907 12 6 2.0400 -0.7212 1.2492 13 6 1.5303 -0.0004 2.5011 14 6 2.1093 -0.6800 3.7446 15 8 3.5365 -0.6648 3.6733 16 6 4.0719 -1.3658 2.5491 17 6 3.5718 -0.7138 1.2575 18 1 -0.3633 -1.0217 0.1107 19 1 -0.3634 0.6066 0.8295 20 1 -0.3633 0.4149 -0.9401 21 1 2.9844 -0.1027 -4.2403 22 1 1.6813 -1.7505 1.2497 23 1 0.4419 -0.0501 2.5322 24 1 1.8468 1.0423 2.4752 25 1 1.7842 -0.1441 4.6364 26 1 1.7586 -1.7110 3.7919 27 1 5.1607 -1.3239 2.5795 28 1 3.7472 -2.4059 2.5809 29 1 3.9305 0.3142 1.2059 30 1 3.9444 -1.2729 0.3991 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260422287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = -92.475703 kcal Electronic energy + Delta-G solvation = -11798.846645 eV Core-core repulsion = 9785.306159 eV Total energy + Delta-G solvation = -2013.540486 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.32212 -37.04239 -34.25471 -32.01899 -31.65118 -27.29708 -25.75220 -24.11053 -21.88439 -20.61164 -18.99615 -17.08823 -16.80666 -16.33844 -15.69216 -14.93396 -14.88066 -14.56165 -14.34455 -13.81565 -13.24780 -12.87331 -12.57204 -12.46862 -12.35576 -12.12765 -11.77679 -11.65192 -11.15379 -11.00807 -10.73568 -10.69486 -10.22435 -8.25876 -6.26412 1.33175 1.34826 1.45139 2.36035 3.04941 3.12009 3.94915 4.03053 4.18775 4.23368 4.41542 4.57075 4.61881 4.75541 4.81657 4.87164 4.96943 5.01241 5.13148 5.19498 5.26518 5.37010 5.47271 5.61886 5.76852 5.82327 6.33802 6.36680 6.79542 7.38007 8.91415 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.051021 B = 0.013335 C = 0.012396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.661080 B = 2099.159225 C = 2258.197566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 H 0.025 0.975 4 C -0.498 4.498 5 H 0.031 0.969 6 C 0.009 3.991 7 N -0.954 5.954 8 Si 0.935 3.065 9 H -0.270 1.270 10 H -0.292 1.292 11 H -0.246 1.246 12 C -0.071 4.071 13 C -0.149 4.149 14 C 0.060 3.940 15 O -0.402 6.402 16 C 0.066 3.934 17 C -0.138 4.138 18 H 0.044 0.956 19 H 0.058 0.942 20 H 0.027 0.973 21 H 0.262 0.738 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 2.102 12.919 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.010 4.010 3 H 0.043 0.957 4 C -0.536 4.536 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.596 5.596 8 Si 0.760 3.240 9 H -0.196 1.196 10 H -0.218 1.218 11 H -0.170 1.170 12 C -0.090 4.090 13 C -0.187 4.187 14 C -0.016 4.016 15 O -0.322 6.322 16 C -0.010 4.010 17 C -0.176 4.176 18 H 0.063 0.937 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.586 2.219 12.883 13.168 hybrid contribution 0.003 0.418 -1.143 1.217 sum -1.584 2.637 11.740 12.136 Atomic orbital electron populations 1.21925 0.97345 1.00391 0.99498 1.19223 0.93521 0.95261 0.93043 0.95713 1.21236 1.41651 0.93701 0.96985 0.95066 1.25856 0.94868 1.02900 0.95037 1.70054 1.48505 1.37607 1.03392 0.85921 0.79942 0.81059 0.77114 1.19586 1.21813 1.16965 1.21088 0.94611 0.98826 0.94445 1.22314 1.01707 0.99969 0.94680 1.22731 0.80115 1.00492 0.98268 1.87829 1.21698 1.76373 1.46258 1.22626 0.99126 0.94726 0.84571 1.22055 0.96830 1.00829 0.97923 0.93653 0.92360 0.95370 0.92860 0.92840 0.89557 0.92127 0.86973 0.92588 0.88029 0.92739 0.93199 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.64 71.98 0.62 -4.73 16 2 C 0.01 0.38 1.53 -11.54 -0.02 0.36 16 3 H 0.02 1.13 5.39 -2.39 -0.01 1.12 16 4 C -0.50 -27.79 7.69 25.60 0.20 -27.60 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.54 5.47 84.66 0.46 1.00 16 7 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 8 Si 0.93 44.75 26.93 68.60 1.85 46.60 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.25 -10.91 6.90 99.48 0.69 -10.22 16 12 C -0.07 -2.70 1.85 -10.67 -0.02 -2.72 16 13 C -0.15 -4.47 4.97 30.68 0.15 -4.32 16 14 C 0.06 1.56 6.84 72.01 0.49 2.05 16 15 O -0.40 -12.37 10.76 -148.98 -1.60 -13.97 16 16 C 0.07 2.02 6.84 72.01 0.49 2.52 16 17 C -0.14 -5.28 5.11 30.69 0.16 -5.12 16 18 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 19 H 0.06 1.92 6.86 -2.39 -0.02 1.90 16 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 22 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.09 2.29 6.77 -2.39 -0.02 2.27 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 2.50 7.37 -2.39 -0.02 2.48 16 Total: -1.00 -63.90 237.74 4.15 -59.74 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.07 Total: 5.79 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 2.54 Total: -38.55 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.30 Total: -59.61 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.60 Total: -13.97 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Total: -63.90 4.15 -59.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.732 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds