Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 13 13 C 1.53180 * 109.54783 * 179.55657 * 12 2 1 14 14 C 1.53089 * 109.16268 * 183.15375 * 13 12 2 15 15 O 1.42904 * 109.41494 * 57.61158 * 14 13 12 16 16 C 1.42902 * 114.09567 * 298.83554 * 15 14 13 17 17 C 1.53091 * 109.41248 * 61.16431 * 16 15 14 18 18 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 22 22 H 1.09004 * 109.54705 * 299.83038 * 12 2 1 23 23 H 1.09000 * 109.52257 * 303.06098 * 13 12 2 24 24 H 1.08993 * 109.51949 * 63.24933 * 13 12 2 25 25 H 1.09002 * 109.48603 * 297.62682 * 14 13 12 26 26 H 1.09003 * 109.47873 * 177.59166 * 14 13 12 27 27 H 1.08999 * 109.48298 * 301.17844 * 16 15 14 28 28 H 1.08999 * 109.48180 * 181.14096 * 16 15 14 29 29 H 1.09000 * 109.52028 * 182.48293 * 17 16 15 30 30 H 1.08992 * 109.52538 * 62.29380 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 6 2.0400 -0.7213 -1.2492 13 6 3.5718 -0.7126 -1.2565 14 6 4.0718 -1.3662 -2.5474 15 8 3.5365 -0.6664 -3.6724 16 6 2.1093 -0.6817 -3.7439 17 6 1.5304 -0.0005 -2.5011 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 0.7082 1.1609 3.4844 22 1 1.6799 -1.7501 -1.2489 23 1 3.9305 0.3154 -1.2061 24 1 3.9432 -1.2715 -0.3977 25 1 3.7468 -2.4062 -2.5779 26 1 5.1606 -1.3245 -2.5778 27 1 1.7586 -1.7127 -3.7900 28 1 1.7842 -0.1467 -4.6362 29 1 0.4419 -0.0502 -2.5322 30 1 1.8478 1.0419 -2.4758 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260422297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = -72.797424 kcal Electronic energy + Delta-G solvation = -11737.993229 eV Core-core repulsion = 9725.306057 eV Total energy + Delta-G solvation = -2012.687172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86754 -35.26419 -32.29446 -30.60896 -29.25172 -25.30217 -24.10114 -22.68646 -20.31863 -18.92737 -16.26865 -15.68367 -15.48065 -14.50964 -14.31888 -13.41532 -13.17890 -12.56690 -12.37090 -11.78389 -11.44796 -10.93913 -10.79902 -10.76917 -10.56335 -10.26418 -10.04028 -9.90594 -9.51087 -9.48635 -8.64553 -8.62386 -8.28644 -5.94718 -4.00656 3.31093 3.38035 3.40665 4.30362 4.45585 5.34701 5.40388 5.50636 5.59250 5.70918 5.75727 5.89389 6.08198 6.16035 6.46402 6.53436 6.67195 6.87894 6.91028 6.99671 7.12565 7.27971 7.42990 7.62352 7.76910 8.04500 8.19900 8.50401 9.02789 9.63678 11.11155 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059261 B = 0.011862 C = 0.010356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.369301 B = 2359.972622 C = 2703.207780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 H 0.024 0.976 4 C -0.508 4.508 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.077 4.077 13 C -0.139 4.139 14 C 0.059 3.941 15 O -0.393 6.393 16 C 0.062 3.938 17 C -0.152 4.152 18 H 0.009 0.991 19 H 0.080 0.920 20 H 0.022 0.978 21 H 0.258 0.742 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -2.971 -7.850 8.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.546 4.546 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.096 4.096 13 C -0.177 4.177 14 C -0.018 4.018 15 O -0.312 6.312 16 C -0.015 4.015 17 C -0.189 4.189 18 H 0.028 0.972 19 H 0.098 0.902 20 H 0.041 0.959 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.146 -2.769 -7.842 8.589 hybrid contribution 0.074 -0.580 1.199 1.333 sum 2.220 -3.348 -6.644 7.764 Atomic orbital electron populations 1.21839 0.99017 0.98707 0.99979 1.18669 0.92296 0.95543 0.90402 0.95761 1.21215 1.30690 1.12110 0.90623 0.92701 1.24971 0.95211 0.95044 0.98908 1.69892 1.36948 1.23108 1.23115 0.86669 0.78590 0.80081 0.83083 1.20778 1.21337 1.20018 1.21248 0.93836 0.99111 0.95405 1.22136 0.97368 1.01566 0.96613 1.22673 0.97946 0.94620 0.86549 1.87826 1.20586 1.76327 1.46456 1.22575 0.81099 0.99403 0.98406 1.22324 1.00707 1.00533 0.95379 0.97227 0.90154 0.95863 0.93159 0.92757 0.91844 0.90319 0.93969 0.89868 0.93928 0.89949 0.91248 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.62 37.16 0.32 -3.02 16 2 C 0.05 1.23 1.90 -91.77 -0.17 1.05 16 3 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.51 -13.80 7.88 -34.44 -0.27 -14.07 16 5 H 0.05 1.46 6.75 -52.49 -0.35 1.11 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C -0.08 -1.60 1.82 -90.43 -0.16 -1.76 16 13 C -0.14 -2.67 5.11 -26.59 -0.14 -2.81 16 14 C 0.06 0.96 6.84 37.20 0.25 1.21 16 15 O -0.39 -6.81 10.77 -35.23 -0.38 -7.19 16 16 C 0.06 0.97 6.84 37.20 0.25 1.22 16 17 C -0.15 -2.72 4.97 -26.59 -0.13 -2.85 16 18 H 0.01 0.19 6.51 -51.93 -0.34 -0.15 16 19 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 20 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.08 1.57 6.77 -51.93 -0.35 1.22 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 236.52 15.07 3.56 3.56 Total: -1.00 -28.58 236.52 -5.99 -34.57 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.64 Total: -2.68 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.14 Total: -19.48 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.63 Total: -25.10 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.38 Total: -7.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.58 -5.99 -34.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.229 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds