Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 13 13 C 1.53180 * 109.54783 * 179.55657 * 12 2 1 14 14 C 1.53089 * 109.16268 * 183.15375 * 13 12 2 15 15 O 1.42904 * 109.41494 * 57.61158 * 14 13 12 16 16 C 1.42902 * 114.09567 * 298.83554 * 15 14 13 17 17 C 1.53091 * 109.41248 * 61.16431 * 16 15 14 18 18 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 22 22 H 1.09004 * 109.54705 * 299.83038 * 12 2 1 23 23 H 1.09000 * 109.52257 * 303.06098 * 13 12 2 24 24 H 1.08993 * 109.51949 * 63.24933 * 13 12 2 25 25 H 1.09002 * 109.48603 * 297.62682 * 14 13 12 26 26 H 1.09003 * 109.47873 * 177.59166 * 14 13 12 27 27 H 1.08999 * 109.48298 * 301.17844 * 16 15 14 28 28 H 1.08999 * 109.48180 * 181.14096 * 16 15 14 29 29 H 1.09000 * 109.52028 * 182.48293 * 17 16 15 30 30 H 1.08992 * 109.52538 * 62.29380 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 6 2.0400 -0.7213 -1.2492 13 6 3.5718 -0.7126 -1.2565 14 6 4.0718 -1.3662 -2.5474 15 8 3.5365 -0.6664 -3.6724 16 6 2.1093 -0.6817 -3.7439 17 6 1.5304 -0.0005 -2.5011 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 0.7082 1.1609 3.4844 22 1 1.6799 -1.7501 -1.2489 23 1 3.9305 0.3154 -1.2061 24 1 3.9432 -1.2715 -0.3977 25 1 3.7468 -2.4062 -2.5779 26 1 5.1606 -1.3245 -2.5778 27 1 1.7586 -1.7127 -3.7900 28 1 1.7842 -0.1467 -4.6362 29 1 0.4419 -0.0502 -2.5322 30 1 1.8478 1.0419 -2.4758 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260422297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = -89.990181 kcal Electronic energy + Delta-G solvation = -11738.738762 eV Core-core repulsion = 9725.306057 eV Total energy + Delta-G solvation = -2013.432706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.29416 -37.00586 -34.21925 -31.99388 -31.07122 -27.31640 -25.70307 -24.13475 -22.01930 -20.61133 -18.34115 -17.15406 -16.79145 -16.42445 -15.71673 -15.05870 -14.74583 -14.36994 -14.12873 -13.36770 -13.22506 -12.84847 -12.61039 -12.32894 -12.18918 -12.07165 -11.94658 -11.57373 -11.29320 -10.94638 -10.58523 -10.41612 -10.17429 -8.06250 -6.19170 1.40493 1.41422 1.50999 2.43873 3.05991 3.21095 4.02756 4.06052 4.21933 4.24962 4.43155 4.61116 4.71816 4.81023 4.88617 4.98639 5.03826 5.05580 5.23520 5.34817 5.40140 5.48586 5.53725 5.65918 6.02092 6.17522 6.34070 6.42245 6.92862 7.48658 8.98543 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.059261 B = 0.011862 C = 0.010356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.369301 B = 2359.972622 C = 2703.207780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 H -0.012 1.012 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.922 5.922 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 C -0.075 4.075 13 C -0.137 4.137 14 C 0.065 3.935 15 O -0.403 6.403 16 C 0.063 3.937 17 C -0.148 4.148 18 H 0.033 0.967 19 H 0.049 0.951 20 H 0.025 0.975 21 H 0.258 0.742 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -4.183 -8.842 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.006 0.994 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.562 5.562 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.093 4.093 13 C -0.175 4.175 14 C -0.012 4.012 15 O -0.322 6.322 16 C -0.013 4.013 17 C -0.185 4.185 18 H 0.052 0.948 19 H 0.068 0.932 20 H 0.044 0.956 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.595 -3.988 -8.847 10.045 hybrid contribution -0.082 -0.169 1.503 1.515 sum 2.513 -4.157 -7.343 8.804 Atomic orbital electron populations 1.21691 0.98637 0.98679 0.99662 1.18650 0.92668 0.93830 0.92114 0.99370 1.21580 1.30464 1.12161 0.91739 0.92558 1.25761 0.95525 0.95802 1.01964 1.70037 1.38071 1.24450 1.23639 0.85671 0.77977 0.79295 0.79410 1.20351 1.21205 1.19088 1.21134 0.94858 0.98667 0.94678 1.22078 0.96406 1.00773 0.98243 1.22681 0.99212 0.94790 0.84491 1.87827 1.21472 1.76572 1.46374 1.22692 0.80223 1.00419 0.97950 1.22268 1.01223 0.99713 0.95331 0.94816 0.93185 0.95551 0.93272 0.92719 0.93540 0.91518 0.92456 0.87689 0.92362 0.87252 0.90524 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.62 71.98 0.62 -5.66 16 2 C 0.05 2.31 1.90 -11.54 -0.02 2.28 16 3 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 4 C -0.52 -28.53 7.88 25.60 0.20 -28.33 16 5 H 0.06 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -54.24 11.32 21.45 0.24 -53.99 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C -0.07 -3.03 1.82 -10.67 -0.02 -3.05 16 13 C -0.14 -5.17 5.11 30.68 0.16 -5.01 16 14 C 0.06 1.94 6.84 72.01 0.49 2.43 16 15 O -0.40 -12.78 10.77 -148.98 -1.60 -14.38 16 16 C 0.06 1.78 6.84 72.01 0.49 2.28 16 17 C -0.15 -5.04 4.97 30.69 0.15 -4.89 16 18 H 0.03 1.42 6.51 -2.39 -0.02 1.41 16 19 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 20 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 22 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.07 2.63 6.77 -2.39 -0.02 2.61 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 2.48 6.62 -2.39 -0.02 2.47 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -60.68 236.52 4.28 -56.40 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.09 Total: 5.16 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.52 Total: -39.10 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.24 Total: -53.99 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.60 Total: -14.38 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.68 4.28 -56.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.591 kcal (2) G-P(sol) polarization free energy of solvation -60.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds