Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47327 * 2 1 4 4 C 1.53002 * 109.46971 * 120.00127 * 2 1 3 5 5 C 1.50702 * 109.46803 * 294.99736 * 4 2 1 6 6 H 1.07991 * 120.00305 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99867 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00046 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47208 * 60.00367 * 9 7 5 11 11 H 1.48505 * 109.47287 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47083 * 300.00062 * 9 7 5 13 13 C 1.53001 * 109.47237 * 239.99994 * 2 1 3 14 14 H 1.08996 * 110.45687 * 302.60362 * 13 2 1 15 15 C 1.54517 * 110.51084 * 180.02562 * 13 2 1 16 16 C 1.54479 * 104.06037 * 241.21567 * 15 13 2 17 17 O 1.44433 * 104.80518 * 336.02227 * 16 15 13 18 18 C 1.44422 * 105.27452 * 40.51075 * 17 16 15 19 19 H 1.08999 * 109.47428 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47478 * 300.00059 * 1 2 3 21 21 H 1.09001 * 109.46787 * 60.00345 * 1 2 3 22 22 H 1.08996 * 109.47272 * 54.99677 * 4 2 1 23 23 H 1.09005 * 109.47344 * 175.00130 * 4 2 1 24 24 H 0.96997 * 120.00062 * 180.02562 * 8 7 5 25 25 H 1.08991 * 110.51174 * 359.85967 * 15 13 2 26 26 H 1.08995 * 110.51247 * 122.57446 * 15 13 2 27 27 H 1.08997 * 110.37024 * 94.85221 * 16 15 13 28 28 H 1.08995 * 110.37315 * 217.18852 * 16 15 13 29 29 H 1.08995 * 110.37333 * 200.65712 * 18 17 16 30 30 H 1.09001 * 110.37394 * 78.31441 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9922 -0.4022 3.7284 8 7 2.6754 -1.5193 3.8512 9 14 1.4975 0.5621 5.2496 10 1 0.0175 0.6686 5.3086 11 1 1.9915 -0.1385 6.4623 12 1 2.0896 1.9226 5.1876 13 6 2.0400 -0.7212 -1.2492 14 1 1.6482 -1.7376 -1.2890 15 6 3.5849 -0.7358 -1.2732 16 6 3.9476 0.0375 -2.5603 17 8 2.7851 -0.0906 -3.4078 18 6 1.6522 0.0591 -2.5248 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6053 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 2.9220 -1.8427 4.7318 25 1 3.9853 -0.2271 -0.3963 26 1 3.9565 -1.7592 -1.3250 27 1 4.1371 1.0864 -2.3321 28 1 4.8179 -0.4106 -3.0397 29 1 0.7591 -0.3724 -2.9768 30 1 1.4896 1.1113 -2.2910 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -73.854911 kcal Electronic energy + Delta-G solvation = -11496.017534 eV Core-core repulsion = 9483.284506 eV Total energy + Delta-G solvation = -2012.733028 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.20036 -35.32364 -32.43953 -30.32117 -28.49709 -26.63887 -23.99787 -21.98058 -21.10907 -18.86847 -16.47040 -15.98591 -15.15209 -14.97404 -14.46880 -13.57062 -12.94507 -12.49600 -12.36433 -12.04750 -11.59476 -11.15613 -11.04453 -10.87616 -10.65845 -10.50778 -10.30336 -9.96159 -9.66396 -9.51924 -9.07829 -8.92362 -8.33195 -5.99021 -4.00491 3.32700 3.37467 3.39627 4.31439 4.46021 5.07634 5.22392 5.35652 5.37431 5.49739 5.68110 5.93949 5.95507 6.01336 6.10320 6.27331 6.31315 6.42800 6.52625 6.63884 6.97339 7.04600 7.15246 7.17062 7.69127 7.83803 8.01341 8.44333 9.05770 9.62849 11.12192 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067420 B = 0.009707 C = 0.009076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.208394 B = 2883.843781 C = 3084.167309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.114 4.114 14 H 0.075 0.925 15 C -0.151 4.151 16 C 0.044 3.956 17 O -0.387 6.387 18 C 0.049 3.951 19 H 0.045 0.955 20 H 0.062 0.938 21 H 0.031 0.969 22 H 0.015 0.985 23 H 0.019 0.981 24 H 0.260 0.740 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 2.478 -9.001 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.133 4.133 14 H 0.093 0.907 15 C -0.188 4.188 16 C -0.032 4.032 17 O -0.307 6.307 18 C -0.028 4.028 19 H 0.064 0.936 20 H 0.081 0.919 21 H 0.050 0.950 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.266 2.320 -9.098 9.393 hybrid contribution -0.230 0.456 1.234 1.335 sum -0.496 2.776 -7.864 8.355 Atomic orbital electron populations 1.21746 0.96293 1.00897 1.00248 1.21250 0.95046 0.98904 0.94522 0.92470 1.19187 0.96320 0.95371 0.90129 1.21227 1.34794 1.08316 0.91121 0.92715 1.25017 0.95328 0.95081 0.99063 1.69953 1.38961 1.21146 1.23492 0.86703 0.78881 0.80125 0.82557 1.20318 1.21347 1.20310 1.22623 0.94998 1.00223 0.95428 0.90655 1.23026 0.96368 1.01169 0.98252 1.23427 0.89255 0.99496 0.91053 1.89032 1.15535 1.93864 1.32222 1.23557 0.89490 0.99600 0.90119 0.93591 0.91895 0.95006 0.96702 0.96232 0.93026 0.89337 0.91269 0.92662 0.89811 0.89812 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.84 37.16 0.33 -2.17 16 2 C -0.08 -1.57 1.68 -90.62 -0.15 -1.73 16 3 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 4 C 0.03 0.67 4.28 -27.88 -0.12 0.55 16 5 C -0.52 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.05 1.47 7.05 -52.49 -0.37 1.10 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.11 -1.98 2.68 -89.05 -0.24 -2.22 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.15 -2.50 6.13 -25.16 -0.15 -2.65 16 16 C 0.04 0.65 7.63 37.93 0.29 0.94 16 17 O -0.39 -6.38 11.65 -35.23 -0.41 -6.79 16 18 C 0.05 0.76 6.27 37.93 0.24 1.00 16 19 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 21 H 0.03 0.49 7.45 -51.93 -0.39 0.11 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.02 0.52 6.38 -51.93 -0.33 0.18 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.09 1.59 6.46 -51.93 -0.34 1.25 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.87 7.83 -51.93 -0.41 0.46 16 LS Contribution 242.69 15.07 3.66 3.66 Total: -1.00 -29.49 242.69 -5.94 -35.42 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.71 Total: -3.48 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.19 Total: -19.35 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.41 Total: -6.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.49 -5.94 -35.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.431 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds