Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47327 * 2 1 4 4 C 1.53002 * 109.46971 * 120.00127 * 2 1 3 5 5 C 1.50702 * 109.46803 * 294.99736 * 4 2 1 6 6 H 1.07991 * 120.00305 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99867 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00046 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47208 * 60.00367 * 9 7 5 11 11 H 1.48505 * 109.47287 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47083 * 300.00062 * 9 7 5 13 13 C 1.53001 * 109.47237 * 239.99994 * 2 1 3 14 14 H 1.08996 * 110.45687 * 302.60362 * 13 2 1 15 15 C 1.54517 * 110.51084 * 180.02562 * 13 2 1 16 16 C 1.54479 * 104.06037 * 241.21567 * 15 13 2 17 17 O 1.44433 * 104.80518 * 336.02227 * 16 15 13 18 18 C 1.44422 * 105.27452 * 40.51075 * 17 16 15 19 19 H 1.08999 * 109.47428 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47478 * 300.00059 * 1 2 3 21 21 H 1.09001 * 109.46787 * 60.00345 * 1 2 3 22 22 H 1.08996 * 109.47272 * 54.99677 * 4 2 1 23 23 H 1.09005 * 109.47344 * 175.00130 * 4 2 1 24 24 H 0.96997 * 120.00062 * 180.02562 * 8 7 5 25 25 H 1.08991 * 110.51174 * 359.85967 * 15 13 2 26 26 H 1.08995 * 110.51247 * 122.57446 * 15 13 2 27 27 H 1.08997 * 110.37024 * 94.85221 * 16 15 13 28 28 H 1.08995 * 110.37315 * 217.18852 * 16 15 13 29 29 H 1.08995 * 110.37333 * 200.65712 * 18 17 16 30 30 H 1.09001 * 110.37394 * 78.31441 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9922 -0.4022 3.7284 8 7 2.6754 -1.5193 3.8512 9 14 1.4975 0.5621 5.2496 10 1 0.0175 0.6686 5.3086 11 1 1.9915 -0.1385 6.4623 12 1 2.0896 1.9226 5.1876 13 6 2.0400 -0.7212 -1.2492 14 1 1.6482 -1.7376 -1.2890 15 6 3.5849 -0.7358 -1.2732 16 6 3.9476 0.0375 -2.5603 17 8 2.7851 -0.0906 -3.4078 18 6 1.6522 0.0591 -2.5248 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6053 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 2.9220 -1.8427 4.7318 25 1 3.9853 -0.2271 -0.3963 26 1 3.9565 -1.7592 -1.3250 27 1 4.1371 1.0864 -2.3321 28 1 4.8179 -0.4106 -3.0397 29 1 0.7591 -0.3724 -2.9768 30 1 1.4896 1.1113 -2.2910 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -92.011057 kcal Electronic energy + Delta-G solvation = -11496.804844 eV Core-core repulsion = 9483.284506 eV Total energy + Delta-G solvation = -2013.520338 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.51960 -36.96343 -34.47352 -31.73658 -30.06908 -28.31437 -25.81653 -23.37336 -22.65542 -20.44659 -18.51802 -17.28148 -16.62626 -16.50344 -16.15573 -15.09123 -14.57513 -14.31891 -13.85945 -13.42124 -13.38649 -12.87418 -12.74481 -12.50431 -12.29155 -12.15699 -11.93940 -11.51157 -11.34293 -10.98025 -10.84066 -10.64832 -10.50304 -8.16679 -6.25606 1.39931 1.42071 1.49755 2.42030 3.10423 3.16550 3.76066 3.87320 4.07706 4.24968 4.40924 4.46617 4.61742 4.67802 4.84482 4.88052 4.93201 4.97918 5.13493 5.21511 5.31843 5.42210 5.48979 5.58746 5.83367 5.88793 5.92123 6.30769 6.90866 7.42382 8.94761 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067420 B = 0.009707 C = 0.009076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.208394 B = 2883.843781 C = 3084.167309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.114 4.114 14 H 0.069 0.931 15 C -0.154 4.154 16 C 0.049 3.951 17 O -0.397 6.397 18 C 0.055 3.945 19 H 0.042 0.958 20 H 0.045 0.955 21 H 0.067 0.933 22 H -0.015 1.015 23 H -0.003 1.003 24 H 0.261 0.739 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 3.667 -9.759 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.133 4.133 14 H 0.088 0.912 15 C -0.191 4.191 16 C -0.028 4.028 17 O -0.317 6.317 18 C -0.021 4.021 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.086 0.914 22 H 0.003 0.997 23 H 0.016 0.984 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.884 3.521 -9.869 10.516 hybrid contribution -0.014 0.055 1.461 1.462 sum -0.898 3.576 -8.408 9.181 Atomic orbital electron populations 1.21692 0.94893 1.01012 1.01165 1.21074 0.96176 0.98246 0.93335 0.92566 1.19076 0.94824 0.94224 0.92343 1.21661 1.34425 1.08598 0.92226 0.92156 1.25929 0.95341 0.96080 1.02572 1.70092 1.40291 1.22881 1.24251 0.85604 0.78891 0.78835 0.78355 1.19328 1.21130 1.19258 1.22556 0.95453 0.99961 0.95319 0.91205 1.23006 0.95967 1.01415 0.98759 1.23502 0.89518 0.99956 0.89802 1.89028 1.16090 1.93941 1.32610 1.23559 0.89962 0.99823 0.88800 0.93899 0.93631 0.91365 0.99709 0.98424 0.93012 0.91339 0.91248 0.91626 0.87583 0.87874 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.84 71.98 0.64 -4.01 16 2 C -0.07 -2.76 1.68 -10.79 -0.02 -2.78 16 3 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 4 C 0.03 1.66 4.28 29.85 0.13 1.79 16 5 C -0.53 -29.66 8.41 25.60 0.22 -29.45 16 6 H 0.06 3.23 7.05 -2.92 -0.02 3.21 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C -0.11 -3.85 2.68 -9.77 -0.03 -3.87 16 14 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.15 -5.02 6.13 31.61 0.19 -4.83 16 16 C 0.05 1.32 7.63 72.48 0.55 1.87 16 17 O -0.40 -11.99 11.65 -148.98 -1.74 -13.73 16 18 C 0.05 1.55 6.27 72.49 0.45 2.00 16 19 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.04 1.76 6.95 -2.39 -0.02 1.74 16 21 H 0.07 1.93 7.45 -2.39 -0.02 1.91 16 22 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 23 H 0.00 -0.14 6.38 -2.38 -0.02 -0.15 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.07 2.50 6.46 -2.39 -0.02 2.49 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 1.78 7.83 -2.39 -0.02 1.76 16 Total: -1.00 -62.72 242.69 4.26 -58.46 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.09 Total: 4.54 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.60 Total: -38.92 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.60 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.74 Total: -13.73 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.72 4.26 -58.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.551 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds