Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.52995 * 109.47523 * 240.00122 * 2 1 3 14 14 H 1.08997 * 110.45743 * 299.30256 * 13 2 1 15 15 C 1.54515 * 110.51101 * 61.90129 * 13 2 1 16 16 C 1.54484 * 104.05786 * 118.64720 * 15 13 2 17 17 O 1.44426 * 104.80698 * 23.97991 * 16 15 13 18 18 C 1.44639 * 105.36654 * 319.56394 * 17 16 15 19 19 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 23 23 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.08992 * 110.51206 * 237.28879 * 15 13 2 26 26 H 1.09000 * 110.51000 * 0.02562 * 15 13 2 27 27 H 1.09003 * 110.36818 * 142.81467 * 16 15 13 28 28 H 1.08995 * 110.37168 * 265.03275 * 16 15 13 29 29 H 1.08997 * 110.34155 * 281.58768 * 18 17 16 30 30 H 1.09001 * 110.50704 * 159.18520 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 6 2.0400 -0.7212 -1.2492 14 1 1.6958 -1.7553 -1.2593 15 6 1.5779 0.0156 -2.5263 16 6 2.8955 0.4346 -3.2154 17 8 3.8829 -0.4962 -2.7208 18 6 3.5823 -0.6633 -1.3159 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 3.1263 -0.7995 1.2056 23 1 1.6053 -1.7198 1.2951 24 1 2.9317 -1.8367 4.7312 25 1 1.0074 -0.6550 -3.1688 26 1 0.9864 0.8939 -2.2677 27 1 2.8016 0.3486 -4.2979 28 1 3.1609 1.4548 -2.9382 29 1 3.9552 0.1870 -0.7449 30 1 4.0134 -1.5916 -0.9409 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427445.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = -74.028421 kcal Electronic energy + Delta-G solvation = -11492.977107 eV Core-core repulsion = 9480.236555 eV Total energy + Delta-G solvation = -2012.740552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16876 -35.30090 -32.50221 -30.27706 -28.37504 -26.90062 -23.59949 -22.41756 -20.89138 -18.95165 -16.46675 -15.86765 -15.26035 -14.93461 -14.45602 -13.59282 -12.88684 -12.48914 -12.35586 -12.08042 -11.57695 -11.27513 -11.02172 -10.86252 -10.73050 -10.46546 -10.30401 -9.98603 -9.71965 -9.42708 -9.08675 -8.92881 -8.33998 -5.98895 -4.00469 3.31673 3.38322 3.41175 4.34181 4.46616 5.03083 5.14712 5.31528 5.36873 5.50564 5.69337 5.91475 6.00112 6.04108 6.15532 6.17241 6.31406 6.37170 6.48441 6.60450 6.97463 7.04337 7.15534 7.19729 7.67637 7.82485 8.00829 8.44226 9.05847 9.63114 11.12394 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.066141 B = 0.009748 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.236749 B = 2871.569105 C = 3078.963615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.057 0.943 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.114 4.114 14 H 0.075 0.925 15 C -0.152 4.152 16 C 0.045 3.955 17 O -0.388 6.388 18 C 0.052 3.948 19 H 0.044 0.956 20 H 0.061 0.939 21 H 0.032 0.968 22 H 0.017 0.983 23 H 0.016 0.984 24 H 0.260 0.740 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 2.999 -9.901 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.012 4.012 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.133 4.133 14 H 0.094 0.906 15 C -0.190 4.190 16 C -0.032 4.032 17 O -0.307 6.307 18 C -0.024 4.024 19 H 0.063 0.937 20 H 0.080 0.920 21 H 0.051 0.949 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.552 2.782 -9.887 10.387 hybrid contribution -0.436 0.532 1.110 1.306 sum -1.989 3.314 -8.776 9.590 Atomic orbital electron populations 1.21751 0.96223 1.00866 1.00193 1.21255 0.95194 0.98898 0.94355 0.92476 1.19179 0.96226 0.95470 0.90288 1.21246 1.34675 1.08369 0.91096 0.92652 1.25017 0.95294 0.95107 0.99084 1.69959 1.38880 1.21253 1.23417 0.86643 0.78208 0.80438 0.82998 1.20744 1.21276 1.19939 1.22627 0.95116 1.00393 0.95150 0.90607 1.23053 0.97753 1.01016 0.97175 1.23349 0.87907 0.93223 0.98707 1.89077 1.53048 1.64338 1.24214 1.23590 0.95092 1.02227 0.81535 0.93667 0.91967 0.94884 0.96444 0.96602 0.93062 0.91474 0.90427 0.89987 0.92736 0.91770 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.78 37.15 0.33 -2.14 16 2 C -0.08 -1.57 1.64 -90.62 -0.15 -1.72 16 3 H 0.06 1.16 8.12 -51.92 -0.42 0.74 16 4 C 0.03 0.64 4.34 -27.88 -0.12 0.52 16 5 C -0.52 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C -0.11 -1.98 2.68 -89.05 -0.24 -2.22 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.15 -2.18 6.20 -25.16 -0.16 -2.33 16 16 C 0.05 0.63 7.64 37.94 0.29 0.92 16 17 O -0.39 -6.67 11.65 -35.23 -0.41 -7.08 16 18 C 0.05 0.92 6.12 37.94 0.23 1.15 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.06 1.24 6.95 -51.93 -0.36 0.87 16 21 H 0.03 0.51 6.64 -51.93 -0.34 0.17 16 22 H 0.02 0.46 7.18 -51.93 -0.37 0.09 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.06 6.57 -51.93 -0.34 0.72 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.17 7.81 -51.93 -0.41 0.77 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 242.69 15.07 3.66 3.66 Total: -1.00 -29.59 242.69 -5.95 -35.54 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.71 Total: -3.72 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.20 Total: -18.92 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.41 Total: -7.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.59 -5.95 -35.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427445.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.490 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds