Wall clock time and date at job start Mon Mar 30 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.52995 * 109.47523 * 240.00122 * 2 1 3 14 14 H 1.08997 * 110.45743 * 299.30256 * 13 2 1 15 15 C 1.54515 * 110.51101 * 61.90129 * 13 2 1 16 16 C 1.54484 * 104.05786 * 118.64720 * 15 13 2 17 17 O 1.44426 * 104.80698 * 23.97991 * 16 15 13 18 18 C 1.44639 * 105.36654 * 319.56394 * 17 16 15 19 19 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 22 22 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 23 23 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.08992 * 110.51206 * 237.28879 * 15 13 2 26 26 H 1.09000 * 110.51000 * 0.02562 * 15 13 2 27 27 H 1.09003 * 110.36818 * 142.81467 * 16 15 13 28 28 H 1.08995 * 110.37168 * 265.03275 * 16 15 13 29 29 H 1.08997 * 110.34155 * 281.58768 * 18 17 16 30 30 H 1.09001 * 110.50704 * 159.18520 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.1844 0.1032 5.7291 11 1 2.5234 0.3619 6.3142 12 1 1.4343 2.0141 4.9126 13 6 2.0400 -0.7212 -1.2492 14 1 1.6958 -1.7553 -1.2593 15 6 1.5779 0.0156 -2.5263 16 6 2.8955 0.4346 -3.2154 17 8 3.8829 -0.4962 -2.7208 18 6 3.5823 -0.6633 -1.3159 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 3.1263 -0.7995 1.2056 23 1 1.6053 -1.7198 1.2951 24 1 2.9317 -1.8367 4.7312 25 1 1.0074 -0.6550 -3.1688 26 1 0.9864 0.8939 -2.2677 27 1 2.8016 0.3486 -4.2979 28 1 3.1609 1.4548 -2.9382 29 1 3.9552 0.1870 -0.7449 30 1 4.0134 -1.5916 -0.9409 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427445.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:44 Heat of formation + Delta-G solvation = -92.381642 kcal Electronic energy + Delta-G solvation = -11493.772962 eV Core-core repulsion = 9480.236555 eV Total energy + Delta-G solvation = -2013.536407 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50726 -36.95021 -34.51950 -31.72630 -29.75077 -28.77057 -25.48565 -23.72838 -22.43296 -20.49050 -18.49946 -17.26065 -16.70362 -16.39414 -16.26420 -15.06754 -14.56682 -14.18073 -13.86444 -13.60986 -13.29329 -12.87699 -12.78542 -12.59181 -12.22050 -12.09754 -11.83234 -11.63701 -11.32373 -10.98404 -10.78555 -10.70640 -10.51519 -8.16872 -6.26003 1.40047 1.40684 1.51509 2.41967 3.09140 3.16725 3.74764 3.85977 4.06714 4.27531 4.41228 4.47389 4.59704 4.74065 4.82377 4.90275 4.93517 4.98629 5.10316 5.19261 5.31982 5.45237 5.48875 5.57620 5.83080 5.89140 5.90007 6.30358 6.90667 7.42273 8.94836 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.066141 B = 0.009748 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.236749 B = 2871.569105 C = 3078.963615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 H 0.056 0.944 4 C 0.030 3.970 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.263 1.263 13 C -0.113 4.113 14 H 0.069 0.931 15 C -0.143 4.143 16 C 0.039 3.961 17 O -0.402 6.402 18 C 0.053 3.947 19 H 0.040 0.960 20 H 0.044 0.956 21 H 0.070 0.930 22 H -0.007 1.007 23 H -0.013 1.013 24 H 0.261 0.739 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 4.335 -10.851 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.132 4.132 14 H 0.088 0.912 15 C -0.181 4.181 16 C -0.037 4.037 17 O -0.321 6.321 18 C -0.024 4.024 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.011 0.989 23 H 0.005 0.995 24 H 0.070 0.930 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.635 4.131 -10.854 11.909 hybrid contribution -0.079 0.101 1.367 1.373 sum -2.714 4.232 -9.487 10.737 Atomic orbital electron populations 1.21691 0.94685 1.00961 1.01185 1.21085 0.96400 0.98216 0.93109 0.92562 1.19080 0.94608 0.94452 0.92594 1.21677 1.34294 1.08641 0.92181 0.92070 1.25941 0.95305 0.96124 1.02627 1.70098 1.40222 1.23006 1.24222 0.85537 0.77946 0.79343 0.78775 1.19949 1.21061 1.18731 1.22536 0.94768 1.00233 0.95644 0.91216 1.23027 0.98247 1.01408 0.95403 1.23621 0.86788 0.92958 1.00343 1.89064 1.54307 1.65349 1.23407 1.23454 0.95472 1.01246 0.82180 0.94039 0.93675 0.91127 0.98853 0.99455 0.93006 0.89554 0.89153 0.87058 0.91909 0.92888 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.78 71.98 0.63 -3.89 16 2 C -0.07 -2.74 1.64 -10.80 -0.02 -2.76 16 3 H 0.06 2.23 8.12 -2.38 -0.02 2.21 16 4 C 0.03 1.54 4.34 29.85 0.13 1.67 16 5 C -0.53 -29.66 8.41 25.60 0.22 -29.45 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 9 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 C -0.11 -3.81 2.68 -9.78 -0.03 -3.84 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.14 -3.63 6.20 31.61 0.20 -3.43 16 16 C 0.04 0.97 7.64 72.49 0.55 1.53 16 17 O -0.40 -13.26 11.65 -148.98 -1.74 -15.00 16 18 C 0.05 1.88 6.12 72.49 0.44 2.32 16 19 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 20 H 0.04 1.73 6.95 -2.39 -0.02 1.71 16 21 H 0.07 1.96 6.64 -2.38 -0.02 1.94 16 22 H -0.01 -0.38 7.18 -2.39 -0.02 -0.40 16 23 H -0.01 -0.74 8.14 -2.38 -0.02 -0.75 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 2.08 6.57 -2.39 -0.02 2.07 16 27 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.97 7.81 -2.39 -0.02 1.95 16 30 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -63.52 242.69 4.25 -59.27 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.09 Total: 3.76 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 2.59 Total: -37.55 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.84 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.74 Total: -15.00 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.52 4.25 -59.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427445.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.117 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds