Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48534 * 111.00083 * 2 1 4 4 C 1.54939 * 103.22477 * 159.72283 * 3 2 1 5 5 C 1.54587 * 102.92125 * 322.58350 * 4 3 2 6 6 C 1.50709 * 110.39324 * 263.00057 * 5 4 3 7 7 H 1.07998 * 119.99887 * 117.25472 * 6 5 4 8 8 C 1.37873 * 119.99931 * 297.25514 * 6 5 4 9 9 N 1.31515 * 119.99932 * 6.20702 * 8 6 5 10 10 Si 1.86799 * 120.00105 * 186.20644 * 8 6 5 11 11 H 1.48498 * 109.46889 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47173 * 120.00136 * 10 8 6 13 13 H 1.48504 * 109.47253 * 240.00241 * 10 8 6 14 14 C 1.53006 * 110.31141 * 140.87664 * 5 4 3 15 15 N 1.46892 * 109.47355 * 178.96010 * 14 5 4 16 16 C 1.47903 * 110.99771 * 117.39469 * 2 1 3 17 17 H 1.09001 * 109.47198 * 302.60424 * 1 2 3 18 18 H 1.09007 * 109.47455 * 62.60323 * 1 2 3 19 19 H 1.09000 * 109.47629 * 182.60624 * 1 2 3 20 20 H 1.09002 * 110.66442 * 278.15501 * 3 2 1 21 21 H 1.09001 * 110.66975 * 41.28286 * 3 2 1 22 22 H 1.09003 * 110.72204 * 204.22422 * 4 3 2 23 23 H 1.09001 * 110.72601 * 80.94554 * 4 3 2 24 24 H 0.96997 * 120.00170 * 179.97438 * 9 8 6 25 25 H 1.09001 * 109.46549 * 298.96193 * 14 5 4 26 26 H 1.08999 * 109.47013 * 58.95950 * 14 5 4 27 27 H 1.00899 * 110.99842 * 56.04635 * 15 14 5 28 28 H 1.00898 * 110.99742 * 179.97438 * 15 14 5 29 29 H 1.08993 * 109.92127 * 333.50927 * 16 2 1 30 30 H 1.08998 * 109.91290 * 94.80589 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2105 0.5227 5 6 3.2983 0.1053 1.5930 6 6 3.1821 0.7161 2.9659 7 1 2.2816 0.5753 3.5451 8 6 4.2256 1.4546 3.4823 9 7 5.2709 1.7293 2.7330 10 14 4.1546 2.0651 5.2463 11 1 2.8812 1.6256 5.8712 12 1 5.2996 1.5073 6.0096 13 1 4.2260 3.5484 5.2601 14 6 4.4896 -0.8532 1.5382 15 7 4.3400 -1.8802 2.5778 16 6 1.9990 -0.6353 1.2260 17 1 -0.3634 0.5537 0.8657 18 1 -0.3634 0.4729 -0.9124 19 1 -0.3634 -1.0266 0.0467 20 1 2.0041 1.7976 -1.0096 21 1 1.4237 2.0205 0.6729 22 1 3.8124 2.1351 0.9715 23 1 4.1116 0.8835 -0.2788 24 1 6.0048 2.2492 3.0962 25 1 4.5272 -1.3303 0.5589 26 1 5.4116 -0.2969 1.7071 27 1 3.4615 -2.3671 2.4813 28 1 5.1148 -2.5263 2.5620 29 1 1.2758 -0.5403 2.0359 30 1 2.2122 -1.6873 1.0365 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448591.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = -14.467783 kcal Electronic energy + Delta-G solvation = -12016.759841 eV Core-core repulsion = 10038.894783 eV Total energy + Delta-G solvation = -1977.865058 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01669 -36.01720 -33.93394 -31.96084 -29.61849 -27.22756 -26.18044 -24.05502 -21.86791 -20.47723 -18.07674 -16.93221 -16.71110 -15.90076 -15.50233 -15.08611 -14.88246 -14.21160 -13.94310 -13.70903 -13.13284 -12.81611 -12.53733 -12.33641 -12.12360 -12.02463 -11.92923 -11.45741 -11.00281 -10.77926 -10.24222 -9.26794 -9.10030 -7.94224 -6.00561 1.42090 1.46707 1.54323 2.52362 3.31827 3.36919 4.06374 4.22518 4.28192 4.48997 4.62338 4.67390 4.73463 4.83938 4.88887 4.98835 5.07186 5.25191 5.33794 5.51472 5.74169 5.87776 5.95060 6.14761 6.30354 6.47707 6.75254 6.96932 7.03733 7.63039 9.09354 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.041588 B = 0.015991 C = 0.014421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.111779 B = 1750.537700 C = 1941.087369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.534 5.534 3 C 0.044 3.956 4 C -0.096 4.096 5 C 0.059 3.941 6 C -0.482 4.482 7 H 0.035 0.965 8 C 0.031 3.969 9 N -0.907 5.907 10 Si 0.938 3.062 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.093 3.907 15 N -0.836 5.836 16 C 0.055 3.945 17 H 0.018 0.982 18 H 0.080 0.920 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.030 0.970 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.254 0.746 25 H -0.009 1.009 26 H 0.061 0.939 27 H 0.331 0.669 28 H 0.331 0.669 29 H 0.027 0.973 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -3.236 -3.798 7.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.083 4.083 4 C -0.135 4.135 5 C 0.058 3.942 6 C -0.520 4.520 7 H 0.054 0.946 8 C -0.167 4.167 9 N -0.547 5.547 10 Si 0.766 3.234 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.214 1.214 14 C -0.038 4.038 15 N -0.365 5.365 16 C -0.073 4.073 17 H 0.037 0.963 18 H 0.098 0.902 19 H 0.093 0.907 20 H 0.101 0.899 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.008 0.992 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.045 0.955 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.957 -2.821 -3.735 6.818 hybrid contribution -0.053 0.191 1.023 1.042 sum -5.010 -2.630 -2.712 6.274 Atomic orbital electron populations 1.22535 0.87545 1.02151 1.00855 1.64762 1.08670 1.15265 1.37079 1.23140 0.95969 0.89510 0.99707 1.22304 0.93886 1.00892 0.96432 1.19006 0.90108 0.91408 0.93671 1.21040 1.00157 1.30382 1.00465 0.94629 1.25312 0.95511 0.96405 0.99491 1.69995 1.08428 1.40161 1.36113 0.85837 0.77479 0.77284 0.82802 1.20136 1.21438 1.21377 1.21605 1.01319 0.92332 0.88579 1.58507 1.06221 1.18154 1.53663 1.22912 0.97001 0.97892 0.89512 0.96341 0.90153 0.90731 0.89915 0.95161 0.92243 0.94622 0.93663 0.99150 0.92069 0.85612 0.85753 0.95494 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.40 127.69 1.20 1.74 16 2 N -0.53 -20.17 5.55 -909.14 -5.05 -25.22 16 3 C 0.04 1.76 6.56 86.65 0.57 2.33 16 4 C -0.10 -4.49 5.66 31.80 0.18 -4.31 16 5 C 0.06 2.82 0.42 -52.05 -0.02 2.80 16 6 C -0.48 -25.79 7.54 25.60 0.19 -25.60 16 7 H 0.04 1.96 7.35 -2.91 -0.02 1.94 16 8 C 0.03 1.70 4.99 84.65 0.42 2.12 16 9 N -0.91 -50.64 10.06 21.45 0.22 -50.43 16 10 Si 0.94 44.56 29.54 68.60 2.03 46.59 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 C 0.09 4.31 5.23 86.31 0.45 4.76 16 15 N -0.84 -34.48 9.14 -186.72 -1.71 -36.19 16 16 C 0.05 2.28 5.55 86.45 0.48 2.76 16 17 H 0.02 0.57 8.00 -2.39 -0.02 0.55 16 18 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 19 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 20 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 21 H 0.03 1.24 7.96 -2.39 -0.02 1.22 16 22 H 0.06 3.12 6.44 -2.39 -0.02 3.11 16 23 H 0.04 1.64 7.86 -2.39 -0.02 1.62 16 24 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.06 3.25 6.43 -2.39 -0.02 3.23 16 27 H 0.33 12.40 7.56 -89.69 -0.68 11.72 16 28 H 0.33 11.78 9.08 -89.70 -0.81 10.97 16 29 H 0.03 1.16 6.98 -2.39 -0.02 1.14 16 30 H 0.06 2.39 6.77 -2.39 -0.02 2.37 16 Total: -1.00 -57.96 236.26 -1.40 -59.36 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.36 Total: 19.29 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 3.47 Total: -13.41 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -6.54 Total: -111.83 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -57.96 -1.40 -59.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448591.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.890 kcal (2) G-P(sol) polarization free energy of solvation -57.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds