Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48533 * 111.00184 * 2 1 4 4 C 1.54932 * 103.22548 * 200.27990 * 3 2 1 5 5 C 1.54598 * 102.92273 * 37.41411 * 4 3 2 6 6 C 1.50701 * 110.30911 * 96.95943 * 5 4 3 7 7 H 1.07995 * 119.99676 * 244.30134 * 6 5 4 8 8 C 1.37883 * 120.00025 * 64.30573 * 6 5 4 9 9 N 1.31513 * 120.00099 * 350.51202 * 8 6 5 10 10 Si 1.86796 * 119.99733 * 170.51117 * 8 6 5 11 11 H 1.48497 * 109.47191 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47021 * 60.00036 * 10 8 6 13 13 H 1.48499 * 109.47114 * 300.00127 * 10 8 6 14 14 C 1.52999 * 110.30441 * 219.02766 * 5 4 3 15 15 N 1.46900 * 109.47079 * 183.71304 * 14 5 4 16 16 C 1.47901 * 111.00050 * 242.60011 * 2 1 3 17 17 H 1.09005 * 109.47034 * 60.12793 * 1 2 3 18 18 H 1.08999 * 109.47225 * 180.12599 * 1 2 3 19 19 H 1.09002 * 109.47261 * 300.12410 * 1 2 3 20 20 H 1.08993 * 110.66653 * 81.84398 * 3 2 1 21 21 H 1.09001 * 110.66449 * 318.71725 * 3 2 1 22 22 H 1.09002 * 110.72647 * 279.05146 * 4 3 2 23 23 H 1.09002 * 110.72025 * 155.77296 * 4 3 2 24 24 H 0.97002 * 120.00136 * 358.67719 * 9 8 6 25 25 H 1.09001 * 109.47331 * 303.71210 * 14 5 4 26 26 H 1.08996 * 109.47729 * 63.71278 * 14 5 4 27 27 H 1.00900 * 111.00452 * 177.36996 * 15 14 5 28 28 H 1.00898 * 110.99967 * 301.32842 * 15 14 5 29 29 H 1.09005 * 109.91618 * 26.49479 * 16 2 1 30 30 H 1.09005 * 109.91983 * 265.20236 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2105 -0.5228 5 6 3.2982 0.1052 -1.5931 6 6 3.1812 0.7180 -2.9649 7 1 2.2709 0.5989 -3.5336 8 6 4.2364 1.4306 -3.4939 9 7 5.2685 1.7357 -2.7382 10 14 4.1999 1.9626 -5.2842 11 1 5.4434 2.7084 -5.6044 12 1 3.0233 2.8383 -5.5164 13 1 4.1042 0.7636 -6.1550 14 6 4.4907 -0.8518 -1.5398 15 7 4.3737 -1.8405 -2.6199 16 6 1.9990 -0.6354 -1.2259 17 1 -0.3633 0.5119 -0.8912 18 1 -0.3633 -1.0276 0.0023 19 1 -0.3634 0.5158 0.8889 20 1 2.0041 1.7976 1.0095 21 1 1.4237 2.0204 -0.6729 22 1 4.1115 0.8835 0.2787 23 1 3.8122 2.1351 -0.9716 24 1 5.2789 1.4761 -1.8036 25 1 5.4152 -0.2875 -1.6624 26 1 4.5027 -1.3643 -0.5779 27 1 5.1715 -2.4582 -2.6329 28 1 3.5137 -2.3622 -2.5410 29 1 1.2758 -0.5403 -2.0359 30 1 2.2121 -1.6875 -1.0364 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = 8.254560 kcal Electronic energy + Delta-G solvation = -12066.065648 eV Core-core repulsion = 10089.185905 eV Total energy + Delta-G solvation = -1976.879743 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54558 -34.59971 -32.06835 -30.14536 -27.98379 -25.34457 -24.33471 -22.49925 -20.25721 -18.79443 -16.91588 -15.37253 -14.46539 -13.97717 -13.79728 -13.53340 -13.42941 -12.86091 -12.52922 -11.74222 -11.32039 -11.09050 -10.73359 -10.66694 -10.47596 -10.26158 -10.00269 -9.84512 -9.37124 -8.53911 -8.03729 -7.77975 -7.47832 -6.12814 -3.86081 3.51615 3.57973 3.73315 4.64983 4.78932 5.43828 5.60078 5.63901 5.73988 5.85272 6.06660 6.15985 6.17331 6.25578 6.41096 6.45459 6.67723 6.77151 6.91518 7.03600 7.39136 7.44418 7.55579 7.71931 8.14977 8.40745 8.48159 8.56470 9.02495 9.81197 11.19234 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.042298 B = 0.015969 C = 0.014518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.808286 B = 1753.015256 C = 1928.175506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.043 3.957 4 C -0.119 4.119 5 C 0.056 3.944 6 C -0.556 4.556 7 H 0.042 0.958 8 C 0.033 3.967 9 N -0.919 5.919 10 Si 1.062 2.938 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.077 3.923 15 N -0.822 5.822 16 C 0.054 3.946 17 H 0.024 0.976 18 H 0.058 0.942 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.273 0.727 25 H 0.075 0.925 26 H -0.011 1.011 27 H 0.317 0.683 28 H 0.323 0.677 29 H 0.039 0.961 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -3.151 3.376 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.084 4.084 4 C -0.159 4.159 5 C 0.054 3.946 6 C -0.594 4.594 7 H 0.060 0.940 8 C -0.171 4.171 9 N -0.558 5.558 10 Si 0.892 3.108 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.215 1.215 14 C -0.055 4.055 15 N -0.349 5.349 16 C -0.074 4.074 17 H 0.043 0.957 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.007 0.993 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.058 0.942 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.872 -2.006 2.181 4.876 hybrid contribution -1.284 -1.188 1.215 2.130 sum -5.156 -3.193 3.396 6.951 Atomic orbital electron populations 1.22435 0.89700 1.00943 0.99958 1.64742 1.06627 1.15834 1.38256 1.23098 0.97185 0.89271 0.98868 1.22755 0.93636 1.02020 0.97444 1.19117 0.89331 0.90852 0.95274 1.21560 1.02359 1.35618 0.99908 0.93984 1.25473 0.92553 0.94146 1.04924 1.70836 1.31814 1.44409 1.08724 0.83653 0.75447 0.76015 0.75671 1.21211 1.22132 1.21488 1.21936 1.01921 0.93394 0.88207 1.58508 1.04993 1.19941 1.51492 1.22970 0.98045 0.97293 0.89073 0.95744 0.92311 0.92330 0.92042 0.94085 0.93979 0.90060 0.91315 0.90633 0.99324 0.87220 0.86537 0.94234 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.41 60.06 0.57 0.88 16 2 N -0.53 -10.60 5.55 -238.72 -1.33 -11.92 16 3 C 0.04 0.89 6.56 -1.90 -0.01 0.88 16 4 C -0.12 -2.77 4.91 -24.87 -0.12 -2.89 16 5 C 0.06 1.34 0.42 -154.31 -0.06 1.27 16 6 C -0.56 -15.14 7.45 -34.44 -0.26 -15.40 16 7 H 0.04 1.18 7.36 -52.49 -0.39 0.80 16 8 C 0.03 0.91 4.99 -17.82 -0.09 0.82 16 9 N -0.92 -26.76 12.34 55.43 0.68 -26.07 16 10 Si 1.06 25.67 29.91 -169.99 -5.09 20.59 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 14 C 0.08 1.78 5.11 -3.82 -0.02 1.76 16 15 N -0.82 -17.52 9.05 -10.37 -0.09 -17.61 16 16 C 0.05 1.17 5.60 -2.76 -0.02 1.15 16 17 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 21 H 0.04 0.87 8.00 -51.93 -0.42 0.45 16 22 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 23 H 0.08 2.08 6.18 -51.93 -0.32 1.76 16 24 H 0.27 7.76 4.10 -40.82 -0.17 7.59 16 25 H 0.08 1.95 5.85 -51.93 -0.30 1.65 16 26 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.32 5.89 9.08 -39.29 -0.36 5.54 16 28 H 0.32 6.33 7.81 -39.29 -0.31 6.02 16 29 H 0.04 0.89 6.94 -51.93 -0.36 0.53 16 30 H 0.05 1.04 6.93 -51.93 -0.36 0.68 16 LS Contribution 233.29 15.07 3.52 3.52 Total: -1.00 -29.42 233.29 -6.61 -36.02 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.29 Total: 7.01 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.01 Total: -11.53 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.74 Total: -55.61 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.59 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.42 -6.61 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.279 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds