Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48533 * 111.00184 * 2 1 4 4 C 1.54932 * 103.22548 * 200.27990 * 3 2 1 5 5 C 1.54598 * 102.92273 * 37.41411 * 4 3 2 6 6 C 1.50701 * 110.30911 * 96.95943 * 5 4 3 7 7 H 1.07995 * 119.99676 * 244.30134 * 6 5 4 8 8 C 1.37883 * 120.00025 * 64.30573 * 6 5 4 9 9 N 1.31513 * 120.00099 * 350.51202 * 8 6 5 10 10 Si 1.86796 * 119.99733 * 170.51117 * 8 6 5 11 11 H 1.48497 * 109.47191 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47021 * 60.00036 * 10 8 6 13 13 H 1.48499 * 109.47114 * 300.00127 * 10 8 6 14 14 C 1.52999 * 110.30441 * 219.02766 * 5 4 3 15 15 N 1.46900 * 109.47079 * 183.71304 * 14 5 4 16 16 C 1.47901 * 111.00050 * 242.60011 * 2 1 3 17 17 H 1.09005 * 109.47034 * 60.12793 * 1 2 3 18 18 H 1.08999 * 109.47225 * 180.12599 * 1 2 3 19 19 H 1.09002 * 109.47261 * 300.12410 * 1 2 3 20 20 H 1.08993 * 110.66653 * 81.84398 * 3 2 1 21 21 H 1.09001 * 110.66449 * 318.71725 * 3 2 1 22 22 H 1.09002 * 110.72647 * 279.05146 * 4 3 2 23 23 H 1.09002 * 110.72025 * 155.77296 * 4 3 2 24 24 H 0.97002 * 120.00136 * 358.67719 * 9 8 6 25 25 H 1.09001 * 109.47331 * 303.71210 * 14 5 4 26 26 H 1.08996 * 109.47729 * 63.71278 * 14 5 4 27 27 H 1.00900 * 111.00452 * 177.36996 * 15 14 5 28 28 H 1.00898 * 110.99967 * 301.32842 * 15 14 5 29 29 H 1.09005 * 109.91618 * 26.49479 * 16 2 1 30 30 H 1.09005 * 109.91983 * 265.20236 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2105 -0.5228 5 6 3.2982 0.1052 -1.5931 6 6 3.1812 0.7180 -2.9649 7 1 2.2709 0.5989 -3.5336 8 6 4.2364 1.4306 -3.4939 9 7 5.2685 1.7357 -2.7382 10 14 4.1999 1.9626 -5.2842 11 1 5.4434 2.7084 -5.6044 12 1 3.0233 2.8383 -5.5164 13 1 4.1042 0.7636 -6.1550 14 6 4.4907 -0.8518 -1.5398 15 7 4.3737 -1.8405 -2.6199 16 6 1.9990 -0.6354 -1.2259 17 1 -0.3633 0.5119 -0.8912 18 1 -0.3633 -1.0276 0.0023 19 1 -0.3634 0.5158 0.8889 20 1 2.0041 1.7976 1.0095 21 1 1.4237 2.0204 -0.6729 22 1 4.1115 0.8835 0.2787 23 1 3.8122 2.1351 -0.9716 24 1 5.2789 1.4761 -1.8036 25 1 5.4152 -0.2875 -1.6624 26 1 4.5027 -1.3643 -0.5779 27 1 5.1715 -2.4582 -2.6329 28 1 3.5137 -2.3622 -2.5410 29 1 1.2758 -0.5403 -2.0359 30 1 2.2121 -1.6875 -1.0364 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = -14.192133 kcal Electronic energy + Delta-G solvation = -12067.039009 eV Core-core repulsion = 10089.185905 eV Total energy + Delta-G solvation = -1977.853105 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.29091 -36.35761 -34.00360 -31.89307 -29.75235 -26.93719 -26.37578 -24.22728 -21.93375 -20.71999 -18.87794 -17.07100 -16.18193 -15.66551 -15.63182 -15.30907 -15.13582 -14.65191 -14.14006 -13.47877 -13.11860 -12.90471 -12.58740 -12.27048 -12.15496 -12.13247 -11.91808 -11.67601 -11.20332 -10.56470 -10.11534 -9.38749 -9.21184 -8.29546 -6.03294 1.56710 1.65229 1.82027 2.67757 3.21297 3.40337 3.88946 4.03308 4.13751 4.32478 4.47872 4.53864 4.59829 4.67586 4.73975 4.87426 4.91944 4.98745 5.11944 5.22636 5.53720 5.60822 5.84411 6.16729 6.25327 6.39204 6.62251 6.86540 6.91853 7.69380 9.03645 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.042298 B = 0.015969 C = 0.014518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.808286 B = 1753.015256 C = 1928.175506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.532 5.532 3 C 0.050 3.950 4 C -0.118 4.118 5 C 0.043 3.957 6 C -0.559 4.559 7 H 0.026 0.974 8 C -0.010 4.010 9 N -0.943 5.943 10 Si 1.099 2.901 11 H -0.291 1.291 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.086 3.914 15 N -0.833 5.833 16 C 0.062 3.938 17 H 0.017 0.983 18 H 0.076 0.924 19 H 0.082 0.918 20 H 0.088 0.912 21 H 0.030 0.970 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.269 0.731 25 H 0.046 0.954 26 H 0.002 0.998 27 H 0.333 0.667 28 H 0.334 0.666 29 H 0.026 0.974 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -3.804 3.828 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.256 5.256 3 C -0.078 4.078 4 C -0.157 4.157 5 C 0.042 3.958 6 C -0.597 4.597 7 H 0.045 0.955 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.925 3.075 11 H -0.217 1.217 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.045 4.045 15 N -0.362 5.362 16 C -0.066 4.066 17 H 0.036 0.964 18 H 0.095 0.905 19 H 0.100 0.900 20 H 0.106 0.894 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.020 0.980 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.044 0.956 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.954 -2.675 2.642 6.219 hybrid contribution -0.978 -1.012 1.104 1.789 sum -5.932 -3.688 3.746 7.926 Atomic orbital electron populations 1.22545 0.87298 1.02475 1.00792 1.64772 1.08889 1.15005 1.36890 1.23051 0.95089 0.89744 0.99905 1.22621 0.95551 1.00290 0.97239 1.19194 0.91023 0.91512 0.94080 1.21755 1.01453 1.35272 1.01233 0.95531 1.26470 0.92492 0.94451 1.07498 1.70894 1.32722 1.45818 1.08910 0.83149 0.75639 0.76141 0.72573 1.21659 1.20686 1.20719 1.21705 1.00040 0.93458 0.89346 1.58395 1.06420 1.20474 1.50920 1.22800 0.96470 0.97772 0.89507 0.96395 0.90516 0.89963 0.89409 0.95196 0.93527 0.93092 0.91767 0.93598 0.97978 0.85465 0.85277 0.95556 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.41 127.69 1.20 1.72 16 2 N -0.53 -19.88 5.55 -909.18 -5.05 -24.93 16 3 C 0.05 1.96 6.56 86.65 0.57 2.53 16 4 C -0.12 -5.42 4.91 31.80 0.16 -5.27 16 5 C 0.04 2.05 0.42 -52.05 -0.02 2.03 16 6 C -0.56 -30.40 7.45 25.60 0.19 -30.21 16 7 H 0.03 1.49 7.36 -2.91 -0.02 1.47 16 8 C -0.01 -0.56 4.99 84.66 0.42 -0.14 16 9 N -0.94 -55.59 12.34 21.45 0.26 -55.33 16 10 Si 1.10 51.72 29.91 68.60 2.05 53.77 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.09 3.94 5.11 86.30 0.44 4.38 16 15 N -0.83 -34.44 9.05 -186.72 -1.69 -36.13 16 16 C 0.06 2.60 5.60 86.44 0.48 3.08 16 17 H 0.02 0.56 7.99 -2.38 -0.02 0.54 16 18 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 19 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 20 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 21 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 22 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 23 H 0.05 2.64 6.18 -2.39 -0.01 2.63 16 24 H 0.27 15.61 4.10 -92.71 -0.38 15.23 16 25 H 0.05 2.38 5.85 -2.39 -0.01 2.37 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.33 11.90 9.08 -89.69 -0.81 11.09 16 28 H 0.33 12.51 7.81 -89.70 -0.70 11.81 16 29 H 0.03 1.15 6.94 -2.38 -0.02 1.13 16 30 H 0.06 2.43 6.93 -2.38 -0.02 2.42 16 Total: -1.00 -61.40 233.29 -0.97 -62.37 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.01 Total: 22.11 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.44 Total: -21.87 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.47 Total: -116.38 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -61.40 -0.97 -62.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.176 kcal (2) G-P(sol) polarization free energy of solvation -61.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds