Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 H 1.09001 * 109.47156 * 184.86925 * 3 2 1 5 5 C 1.52992 * 109.47651 * 64.86610 * 3 2 1 6 6 C 1.50708 * 109.47164 * 64.99920 * 5 3 2 7 7 H 1.08004 * 119.99468 * 0.02562 * 6 5 3 8 8 C 1.37874 * 119.99949 * 180.02562 * 6 5 3 9 9 N 1.31509 * 120.00356 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99521 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47203 * 90.00330 * 10 8 6 12 12 H 1.48503 * 109.46783 * 210.00206 * 10 8 6 13 13 H 1.48497 * 109.47395 * 329.99566 * 10 8 6 14 14 C 1.52999 * 109.46872 * 304.86332 * 3 2 1 15 15 H 1.09000 * 112.71319 * 54.58042 * 14 3 2 16 16 C 1.53364 * 113.39670 * 284.03804 * 14 3 2 17 17 C 1.53369 * 81.26070 * 218.61518 * 16 14 3 18 18 O 1.43349 * 88.44681 * 26.48310 * 17 16 14 19 19 H 1.08988 * 109.47240 * 305.43880 * 1 2 3 20 20 H 1.09001 * 109.46471 * 65.43936 * 1 2 3 21 21 H 1.08999 * 109.46817 * 185.43269 * 1 2 3 22 22 H 1.08994 * 109.47467 * 239.99485 * 2 1 3 23 23 H 1.09005 * 109.46869 * 119.99481 * 2 1 3 24 24 H 1.08992 * 109.47611 * 185.00095 * 5 3 2 25 25 H 1.09000 * 109.46983 * 305.00265 * 5 3 2 26 26 H 0.96996 * 120.00593 * 180.02562 * 9 8 6 27 27 H 1.08999 * 114.56360 * 331.70641 * 16 14 3 28 28 H 1.08997 * 114.57032 * 105.52223 * 16 14 3 29 29 H 1.09001 * 113.39252 * 271.58449 * 17 16 14 30 30 H 1.08999 * 113.39098 * 141.38398 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4438 -0.0872 5 6 1.6324 2.1276 1.3058 6 6 2.3289 1.4586 2.4628 7 1 2.9958 0.6281 2.2844 8 6 2.1145 1.9068 3.7489 9 7 1.3020 2.9178 3.9662 10 14 2.9784 1.0779 5.1829 11 1 4.2798 1.7485 5.4314 12 1 2.1296 1.1788 6.3973 13 1 3.2123 -0.3526 4.8600 14 6 1.4325 2.1981 -1.1836 15 1 0.3438 2.1491 -1.2002 16 6 2.0785 1.8436 -2.5286 17 6 1.8829 3.3481 -2.7534 18 8 1.9445 3.5287 -1.3327 19 1 -0.3633 0.5958 0.8372 20 1 -0.3632 0.4272 -0.9347 21 1 -0.3633 -1.0231 0.0973 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.9175 3.1790 1.2689 25 1 0.5532 2.0482 1.4363 26 1 1.1515 3.2333 4.8709 27 1 3.1193 1.5270 -2.4620 28 1 1.4694 1.2067 -3.1700 29 1 0.9117 3.5993 -3.1798 30 1 2.7103 3.8173 -3.2856 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260471072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = -33.135360 kcal Electronic energy + Delta-G solvation = -11593.349076 eV Core-core repulsion = 9582.381781 eV Total energy + Delta-G solvation = -2010.967296 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.33241 -35.52196 -32.36955 -29.39576 -28.81304 -26.35628 -23.75490 -22.68113 -20.54270 -18.59276 -16.36501 -15.94339 -15.37868 -14.88463 -14.38656 -13.91420 -12.83779 -12.33744 -12.30192 -12.27489 -11.64592 -11.14024 -11.05072 -10.73202 -10.59454 -10.51700 -10.22350 -10.03066 -9.59156 -9.24956 -8.92798 -8.75165 -8.25173 -5.91056 -3.92263 3.36288 3.42387 3.45054 4.37505 4.51688 4.62047 5.19670 5.44220 5.49062 5.62637 5.76296 5.81507 5.86611 5.90970 6.04080 6.24051 6.39684 6.43133 6.50353 6.76077 6.84567 6.99678 7.12266 7.26965 7.81303 7.97023 8.11645 8.51960 9.14259 9.70210 11.20280 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.053177 B = 0.011111 C = 0.010194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.414798 B = 2519.415404 C = 2745.968511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.083 4.083 4 H 0.062 0.938 5 C 0.028 3.972 6 C -0.513 4.513 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.067 3.933 15 H 0.085 0.915 16 C -0.188 4.188 17 C 0.023 3.977 18 O -0.360 6.360 19 H 0.070 0.930 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -3.555 -10.997 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.102 4.102 4 H 0.081 0.919 5 C -0.009 4.009 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.010 3.990 15 H 0.102 0.898 16 C -0.226 4.226 17 C -0.054 4.054 18 O -0.279 6.279 19 H 0.089 0.911 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.466 -3.231 -10.665 11.153 hybrid contribution 0.403 -0.433 0.749 0.954 sum -0.064 -3.664 -9.916 10.572 Atomic orbital electron populations 1.21854 0.96844 1.00662 1.01567 1.21345 0.95510 0.96472 1.00857 1.21370 0.99091 0.94059 0.95660 0.91939 1.19118 0.96742 0.95833 0.89223 1.21242 1.26461 1.15955 0.91442 0.92732 1.25007 0.95437 0.95159 0.98884 1.69971 1.36660 1.26036 1.20823 0.86662 0.79553 0.79868 0.82313 1.20793 1.21344 1.19956 1.23473 0.98129 0.82327 0.95120 0.89774 1.24415 1.02634 0.96923 0.98620 1.23444 1.01074 0.95276 0.85626 1.89997 1.84680 1.34346 1.18866 0.91144 0.94021 0.93997 0.94254 0.90624 0.96141 0.96184 0.93149 0.88749 0.91046 0.91130 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.10 -1.94 5.50 -26.73 -0.15 -2.09 16 3 C -0.08 -1.76 2.02 -90.62 -0.18 -1.94 16 4 H 0.06 1.37 8.10 -51.93 -0.42 0.94 16 5 C 0.03 0.74 4.29 -27.88 -0.12 0.62 16 6 C -0.51 -14.63 8.34 -34.44 -0.29 -14.91 16 7 H 0.05 1.51 7.08 -52.48 -0.37 1.13 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.07 1.22 2.94 -39.29 -0.12 1.11 16 15 H 0.08 1.49 6.40 -51.93 -0.33 1.16 16 16 C -0.19 -2.68 8.04 -26.35 -0.21 -2.89 16 17 C 0.02 0.34 8.74 24.60 0.21 0.55 16 18 O -0.36 -7.27 12.24 -35.23 -0.43 -7.70 16 19 H 0.07 1.40 6.23 -51.94 -0.32 1.08 16 20 H 0.04 0.63 6.58 -51.93 -0.34 0.29 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.08 1.54 6.82 -51.93 -0.35 1.19 16 24 H 0.02 0.60 7.89 -51.93 -0.41 0.20 16 25 H 0.02 0.55 6.24 -51.93 -0.32 0.23 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 243.29 15.07 3.67 3.67 Total: -1.00 -31.23 243.29 -6.20 -37.42 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.54 Total: -3.29 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.61 Total: -20.31 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.82 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.43 Total: -7.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.23 -6.20 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.289 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds