Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99851 * 2 1 4 4 H 1.48501 * 109.47117 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47211 * 119.99876 * 3 2 1 6 6 H 1.48495 * 109.47557 * 240.00077 * 3 2 1 7 7 C 1.37880 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99467 * 15.77048 * 7 2 1 9 9 C 1.50699 * 119.99887 * 195.76872 * 7 2 1 10 10 H 1.08998 * 109.47178 * 305.52522 * 9 7 2 11 11 N 1.46896 * 109.47202 * 65.53281 * 9 7 2 12 12 C 1.53006 * 109.46749 * 185.52753 * 9 7 2 13 13 C 1.53123 * 109.52285 * 299.87554 * 12 9 7 14 14 C 1.53044 * 109.27246 * 182.50498 * 13 12 9 15 15 N 1.46848 * 109.57450 * 59.08482 * 14 13 12 16 16 C 1.46837 * 111.19842 * 298.28588 * 15 14 13 17 17 C 1.53037 * 109.52501 * 61.74585 * 16 15 14 18 18 H 0.97000 * 119.99436 * 174.95228 * 1 2 3 19 19 H 1.00900 * 110.99835 * 300.36268 * 11 9 7 20 20 H 1.00899 * 111.00453 * 64.31652 * 11 9 7 21 21 H 1.08995 * 109.51971 * 60.00034 * 12 9 7 22 22 H 1.08997 * 109.50037 * 302.38456 * 13 12 9 23 23 H 1.08998 * 109.50167 * 62.50184 * 13 12 9 24 24 H 1.08993 * 109.41121 * 299.06551 * 14 13 12 25 25 H 1.09002 * 109.45882 * 179.12952 * 14 13 12 26 26 H 1.00898 * 111.00320 * 62.38484 * 15 14 13 27 27 H 1.09000 * 109.46965 * 301.72832 * 16 15 14 28 28 H 1.09007 * 109.46546 * 181.75515 * 16 15 14 29 29 H 1.08996 * 109.50780 * 180.87898 * 17 16 15 30 30 H 1.09005 * 109.53777 * 60.77622 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 1.4951 -2.1116 -0.2552 9 6 3.4690 -1.2186 0.3541 10 1 4.0092 -0.5191 -0.2838 11 7 3.6388 -0.8303 1.7606 12 6 4.0208 -2.6303 0.1447 13 6 3.2649 -3.6136 1.0426 14 6 3.8625 -5.0126 0.8752 15 7 5.2858 -4.9859 1.2353 16 6 6.0395 -4.0844 0.3548 17 6 5.5081 -2.6575 0.5078 18 1 -0.4849 -0.8368 -0.0739 19 1 3.2764 0.0967 1.9260 20 1 3.2065 -1.5027 2.3762 21 1 3.8952 -2.9193 -0.8987 22 1 3.3573 -3.3014 2.0828 23 1 2.2125 -3.6300 0.7592 24 1 3.7562 -5.3301 -0.1621 25 1 3.3365 -5.7122 1.5247 26 1 5.4091 -4.7317 2.2040 27 1 5.9231 -4.4062 -0.6801 28 1 7.0949 -4.1098 0.6263 29 1 6.0573 -1.9912 -0.1574 30 1 5.6369 -2.3291 1.5392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260492297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = -40.952949 kcal Electronic energy + Delta-G solvation = -11834.226029 eV Core-core repulsion = 9855.212488 eV Total energy + Delta-G solvation = -1979.013541 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07139 -36.63079 -34.06037 -31.70673 -31.40225 -27.89015 -25.01604 -23.76751 -22.16468 -20.45737 -19.63005 -17.21540 -16.83786 -15.61729 -15.54306 -15.27253 -14.94057 -14.50404 -14.26634 -14.05378 -13.41528 -12.95351 -12.65638 -12.42800 -12.09082 -11.93789 -11.67447 -11.39090 -11.28917 -11.05789 -10.57756 -9.44429 -9.24955 -8.66143 -6.45175 1.40132 1.47176 1.66975 2.39941 3.02324 3.45647 3.91705 4.01096 4.13931 4.29062 4.31672 4.53024 4.59178 4.70773 4.90952 4.96140 5.03292 5.16290 5.21197 5.33475 5.46521 5.66010 5.88028 5.96619 6.10769 6.42866 6.52829 6.59676 6.84313 7.35794 8.57315 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063576 B = 0.012728 C = 0.011448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.312003 B = 2199.354406 C = 2445.334069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.025 4.025 3 Si 1.091 2.909 4 H -0.292 1.292 5 H -0.240 1.240 6 H -0.272 1.272 7 C -0.625 4.625 8 H 0.019 0.981 9 C 0.185 3.815 10 H 0.025 0.975 11 N -0.840 5.840 12 C -0.063 4.063 13 C -0.132 4.132 14 C 0.064 3.936 15 N -0.682 5.682 16 C 0.060 3.940 17 C -0.136 4.136 18 H 0.250 0.750 19 H 0.323 0.677 20 H 0.326 0.674 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.345 0.655 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 -5.236 2.970 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.224 4.224 3 Si 0.913 3.087 4 H -0.218 1.218 5 H -0.165 1.165 6 H -0.198 1.198 7 C -0.665 4.665 8 H 0.038 0.962 9 C 0.074 3.926 10 H 0.043 0.957 11 N -0.370 5.370 12 C -0.082 4.082 13 C -0.171 4.171 14 C -0.066 4.066 15 N -0.310 5.310 16 C -0.070 4.070 17 C -0.175 4.175 18 H 0.059 0.941 19 H 0.136 0.864 20 H 0.138 0.862 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.163 0.837 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.967 -4.279 2.523 12.957 hybrid contribution -2.128 -0.725 -0.169 2.254 sum 9.839 -5.003 2.354 11.286 Atomic orbital electron populations 1.70990 1.08292 1.29820 1.48338 1.27250 0.96228 1.06429 0.92457 0.83404 0.74479 0.71587 0.79195 1.21844 1.16497 1.19785 1.23033 0.97866 0.94367 1.51237 0.96232 1.19175 0.92071 0.93881 0.87434 0.95707 1.59777 1.64389 1.06556 1.06296 1.20937 0.95212 0.94657 0.97432 1.22076 0.98883 0.96569 0.99591 1.21959 0.88601 0.94746 1.01320 1.60774 1.08898 1.53302 1.08047 1.22051 0.98146 0.89282 0.97512 1.22171 0.94500 0.98392 1.02478 0.94077 0.86374 0.86202 0.94322 0.92110 0.94684 0.92097 0.89977 0.83694 0.91888 0.89036 0.92370 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.70 21.45 0.29 -58.22 16 2 C -0.03 -1.44 5.39 84.66 0.46 -0.98 16 3 Si 1.09 49.63 26.43 68.60 1.81 51.45 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.24 -9.57 5.69 99.48 0.57 -9.00 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.63 -34.74 8.46 25.60 0.22 -34.52 16 8 H 0.02 1.20 6.78 -2.91 -0.02 1.18 16 9 C 0.18 8.44 2.08 44.17 0.09 8.53 16 10 H 0.03 1.18 6.83 -2.39 -0.02 1.16 16 11 N -0.84 -34.77 8.41 -171.80 -1.45 -36.22 16 12 C -0.06 -2.46 2.10 -10.71 -0.02 -2.49 16 13 C -0.13 -4.79 4.80 30.65 0.15 -4.64 16 14 C 0.06 1.87 6.55 86.33 0.57 2.43 16 15 N -0.68 -17.77 6.87 -514.01 -3.53 -21.30 16 16 C 0.06 1.55 6.55 86.33 0.57 2.12 16 17 C -0.14 -4.26 5.24 30.65 0.16 -4.10 16 18 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 19 H 0.32 13.77 5.56 -89.69 -0.50 13.27 16 20 H 0.33 13.21 6.96 -89.69 -0.62 12.59 16 21 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 2.15 6.45 -2.39 -0.02 2.13 16 23 H 0.03 1.50 6.62 -2.39 -0.02 1.49 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.35 8.20 8.86 -89.70 -0.79 7.40 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.27 7.53 -2.38 -0.02 2.25 16 Total: -1.00 -61.70 229.66 -1.64 -63.33 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.95 Total: 34.61 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 2.18 Total: -33.65 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.68 Total: -115.74 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.81 Total: 51.45 kcal Total: -61.70 -1.64 -63.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.378 kcal (2) G-P(sol) polarization free energy of solvation -61.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds